Athalia rosae (coleseed sawfly): 105683795
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Entry
105683795 CDS
T09776
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105683795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aroa03400
]
105683795
DNA repair and recombination proteins [BR:
aroa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105683795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_22
nSTAND_NTPase5
ARM_CUL7_CUL9
Motif
Other DBs
NCBI-GeneID:
105683795
NCBI-ProteinID:
XP_012252114
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All DBs
Position
1:29045112..29051026
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AA seq
1142 aa
AA seq
DB search
MSKVNTLFNYFKSPKADKQAANKVSSPKADSPKVKDRPRRKVGQKRDKENANDENQKTPT
RKQARKSVTPTSRKRSSKTEEDESTRPKKRRLVIPSDNSDESGDEFKPDEDEESSSEASL
SEVDSESEDLSSAVDSDEETPKKKSNARSKKPASKTNGRGKTLEKSETKTNPSSQSSGGA
NNTEWSHLKYDFLQPNKIKDIHKRPPTDPNYDPKTLFVPHEFKINQTPAMKQWWEMKCKN
FDCVLFFKVGKFYELYHMDAVTGVNEIGLSYMRGEFAHSGFPEIAYGRFASSLIEKGYKV
ARIEQTENPEMMSARVSKMSHVTKFDKVVKREICQISSKGTRVFTAQDVDPNSATSSYLL
SIVEKSDPSSIISIYGVCFIDTSIGDFHLGQFQDDRHSSRLLTLVSHYPPCQIIYERGGL
SERTNKILNTALATALKESLQKETQFWSASTTLKNLHEGDYFKSETNSDFSWPEGLKPYL
SPGDSLGLTAADGAELAVSALGGCVYHLKASFIDQQLLAQCRFETWTPPDDQDHRKSGKL
ANNMVLDAITINNLRVLDGAGSLIRTLDHCCTPFGKRLLREWICRPSCRKFEIIQRQEAI
SDLMEQMEAMQNVRRILGSLPDLERLLSKIHAQGNFVKGQNHPDSRAIMYESKTYSKRKI
LDFTNVLQGFEEALNIVDSFAGAKSSLLNRCTKHAPEGDFPALEEMLNHFKTAFDQEEAK
KEGCIIPKRGVDSEYDAVLDELASLKEDLNEYLESQRKHFGVKVNYFGSDKKRYQIEVPE
SQLRKVTTEYELQSQRKGFKRYFTPETKEFLARQIAVENNKDKVLKDISRRIFAKFSEKY
DMWCSAVYQLATLDVLTSFAEYSQSGEMSVPIIEDATNEKPAFIEIRDGRHPCVTSDDFI
PNDTMLGTEGSASLVILTGPNMGGKSTLMRQVGLLTIMAQIGCHIPASSCRLTLVDRIFT
RLGANDDILGGQSTFLVELSETATILQHATPNSLVLVDELGRGTSTYDGTAIAAAVVGAL
KDLKSRTLFSTHYHSLVEDYKSDENVSLSHMACMVETEEEEEVSQETVTFLYKLSKGACP
KSYGFNAARLAGIPSNITLKAHEIASKLESEVNQRYCFTALCKGNKSESNDLISSLKLLH
VK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagtgaatacgcttttcaattactttaagtcacctaaagccgacaagcaggct
gcgaacaaagtttctagtcctaaagcagattctcccaaagtgaaggatagaccaagacga
aaggtagggcagaagagagacaaagaaaacgcgaatgatgaaaaccaaaaaactccaacg
cgtaaacaggcaagaaagtctgtaacccccacaagcagaaagagatcatcaaaaactgag
gaagatgagtctacccgtcctaagaaaaggagattggtaataccgtcagacaacagtgac
gagtctggggacgaattcaagcctgatgaagatgaagaaagttcatcagaggcttcttta
tctgaagttgacagtgagtcagaagatctatcttctgcggttgacagcgatgaagaaact
ccaaagaaaaaatcgaatgccaggtcaaagaagcctgcctccaaaacaaatggtcgtgga
aaaaccttggagaaatccgaaacaaaaaccaatccatccagccaatctagtggtggtgcg
aataatacagaatggagtcatctgaaatacgattttcttcagccaaataaaataaaggat
atacacaaaagacctccaacagatccaaattatgatccaaagacactttttgtgccacat
gaattcaaaataaatcaaactccggcaatgaaacagtggtgggaaatgaaatgcaagaat
ttcgattgcgtgttatttttcaaagttggaaaattttatgaattatatcatatggatgcg
gtaactggtgttaatgagattggtttatcttatatgcgtggcgagttcgctcactcagga
tttccggaaatagcgtatggccgtttcgcatcaagcttgatcgaaaaaggatacaaagta
gcaagaattgaacagactgaaaatccagaaatgatgtctgcgcgagttagtaagatgtct
catgtcaccaaatttgacaaagtggtaaagagagaaatctgccaaattagtagcaagggt
accagagtgtttacagcgcaggatgttgatccaaattcagccacttcgagttaccttcta
tcaatagtagagaagtctgatccatcttcgattatatcaatctatggtgtctgtttcatc
gatacttctatcggagattttcatctcggtcagttccaagatgatcgccatagttccaga
ctactaactctcgtctcacattaccctccatgtcagattatatatgaacgaggtggtctg
tcagagcgaacgaataaaattttgaacactgccttagccactgcattgaaagaatcactg
caaaaggaaacacaattttggtccgcatctactactctgaaaaatctacatgaaggagac
tatttcaaatcagagacgaattcggatttctcatggccagagggtttgaagccgtacctg
agcccaggtgatagcctgggtttaacagcggcagatggggcagaattagctgtgtccgct
ctgggtggctgcgtataccacctgaaagcatccttcatagatcagcaactacttgcgcag
tgtcgttttgagacatggactcctccggatgaccaagatcatcgtaaatcaggaaaactt
gccaacaacatggtactagatgctattactatcaacaatctaagagttctcgatggagct
ggttcactcattagaacgttagatcactgctgtacaccatttggtaaaaggttattacgg
gaatggatctgtagaccgtcgtgtcgtaaatttgagattattcaacgccaagaggctatt
tctgacctaatggagcagatggaagctatgcaaaatgttcgtcgaattttggggtccctt
ccagatctggaaagattgctaagcaaaatacatgcccagggaaattttgtgaaaggacaa
aatcatccagattcaagagccatcatgtatgagagtaaaacttattcgaagcgcaagatc
ctggactttacaaacgtactccaagggttcgaagaagctttgaatattgtcgattccttt
gctggtgctaaaagtagtttgttgaatcgatgtactaagcacgcaccggaaggtgatttt
cctgcactcgaggaaatgctcaaccacttcaagacggcatttgatcaagaagaagccaaa
aaggaagggtgcattataccaaaacgtggagttgactctgaatatgacgctgtactggac
gagttagcttccttgaaagaagatctgaacgagtatctagaatcacagagaaaacatttc
ggagtaaaagtgaactattttggcagtgataagaaacgttatcaaattgaggttcctgaa
tctcaattaagaaaagtgaccactgaatatgaacttcagtcgcaacgcaaaggcttcaaa
cgttacttcaccccagaaactaaagagtttttagctcgacagattgctgtcgaaaacaac
aaagacaaagtcctcaaggatatcagtcggaggatattcgcgaaattcagtgagaaatat
gatatgtggtgcagtgctgtctaccagctggctacactcgatgttcttacatcatttgct
gaatattctcagagcggagagatgtctgttcctataatagaagatgcaacgaatgaaaaa
cctgcttttattgagataagagacggtagacacccctgcgttacatctgacgactttatt
cccaacgacaccatgctcggaaccgaaggatctgcctctcttgttattctaactggaccc
aatatgggaggaaagtcaacacttatgcgacaagttgggctgctcacgatcatggcgcaa
attggttgtcacattcctgcaagttcatgccggttaacgttagtggatcggattttcact
cggctgggtgccaatgacgacatattaggaggtcaaagtacattcttagtcgaactcagt
gaaactgctactatactacaacacgccacgccgaattcattggtgctcgttgatgaactg
ggtcgaggtacttcaacttatgatggaacagctattgctgcagcggtagttggagctctg
aaggatttaaaatcacgcaccttattctcgacgcattatcactccctggtagaagactat
aaatctgatgaaaacgttagcctcagtcacatggcgtgtatggtagaaaccgaagaggaa
gaggaagtgtctcaagaaactgtcacatttttgtacaaactcagcaaaggtgcttgccca
aagtcttatgggttcaacgcagcccgcttagctggaattccatctaatatcaccctgaaa
gctcacgagatcgctagcaagttggagagcgaagtaaaccagagatattgctttaccgct
ctttgcaaaggtaacaaaagtgaatcaaacgatctgatctcctctttaaagttacttcat
gtgaagtaa
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