Athalia rosae (coleseed sawfly): 105685192
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Entry
105685192 CDS
T09776
Name
(RefSeq) endoribonuclease Dcr-1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
aroa
Athalia rosae (coleseed sawfly)
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aroa03036
]
105685192
Chromosome and associated proteins [BR:
aroa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105685192
microRNA pathway
RISC loading complex
105685192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
105685192
NCBI-ProteinID:
XP_012254499
LinkDB
All DBs
Position
1:18532474..18541098
Genome browser
AA seq
1933 aa
AA seq
DB search
MAFPLNDQIYTKSFTPREYQVELLYAALERNIIVCLGKNCEQIFIVIKLIQELANSNRRS
PSDGGKRSIYILRDTERCLTKAVYIQQLTDLRVLVCDSATWPKFDEKFAESQVIVMTSHD
CAELLLQKKILPSQINLVIIDQCHKAINDEKLKYVLQKLTISDGPRIVGFAAPVFNLTHK
LGRLEAEIKRVESTFHCTIETASDILSVLRYSPKPKEYIVEFKCAEYEGLDRTLENCALH
AMNFLCDHRYDPTEIYTDEFLEDIQKIPDPKQEPCSMIEDFLYILRTLGAWCANHAALAL
LIQAEKLKVKTPYERHYLLFNVVVSLFVKIRAICESEFENLSEKEKLYKYSTPCVHRLLH
ILKCYAPSHKKESIIADDKLNNGISAHKNEADNSRGAAQQSKSVGNVRKPRTGFKRTPKS
LRYPRSQIDPDLLCGVIFVDKGFTAKILFYLLNDACKHDKELQFLSPLYTIEKNPEDTNS
PHDVGVQHRKQEEVLKSFRIHECNLLIATSILEEGIDIPKCNFIMRYDFPKSYQSYVQCK
SRARANDALHVLFVNRNVSDECVTQLARYHYIEKILLLKCVNKEPMEEEEFYADKCGDLL
PHYKPLDIDGAPSVSFNSAISLVNRYCAKLPSDTFTRLTPEWTIEPITVDNQPMFVCSIR
LPINSPVKYTLTSYPMPNRAMARRLAALQLCIELHRANEIDDYLLPIGKENFKAKPEDAE
VPALPDETTADFSEARPGTTKRRQYYYKKIAEALTDCRPVTMKQSFLYHISMVLTCPLPE
EQNTRGRRIYPPEDSAIGFGILTLKEIPKLCPFPIYTRSGEVHVKLKLSKQMVILDPAQI
ERVAAFLNYTFTNVLRLQKYLMLFDPNASEHSYFIVPVKTVTTDDGPDISVHWEFLECIY
ENKNTVPNEVPEEVRKQFQFDASKYHDAVIMPWYRNQDQPQYFYVAEICNTLNPRSSFPG
ADYSTFEEYYLKKYNIQIQNLSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKKA
KRENLEQKQILVAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCHVAEMINLGQ
QHLDPEFEWPPLDFGWSLAEVLKKSKDNSKVTDVKTEIKITELIPPKSTNARFVTKENGE
CNHENDENYVDEDNEMEIGTWSNEMAINTIELSSESLDMFPPNITGLQDTFSWNDIRYGS
PACESDLDAYDTDDSSSEAIGDYSDESDEDGGGLRISFMGDNVAEAVEDENRIRKSEINK
RILDLLELERSYDEDVWHCLDDIDDEMIKKHKEAQNAATLSNKKQIIENKLFIPCDREIV
LKRRLLTVQNKTETLIPECQEYILKVAKCFTDEVINTKTVREPVKKEFNKSSPSEDVEST
LFSFDYQPNLKGHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYD
NIHEGKLSHLRSKQVSNLNLYRLGRQKVLGESMIATKFEPHDNWLPPCYYVPRELEQALI
ESGVPANLWNQADIPVLRAVNQNEICQLVKETEHKLGIMRTELDKNSNDYVTDFENLRCF
IPYNLITQHSIPDKSVADCVEALIGAYLIACGPRGAFLFMAWLGIHVLPFEEVSIVSANE
PVDKPPGSSTYVKGTNGNGETVWTHIRYGNLDEPQCPLLRHVPNPEQELSMMLDGYNELE
ASMGYKFRDPSYLLQAFTHASYQPNKLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSPG
ALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVIDRFVRIQEENGHSISEEYYLI
GEDECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWRVYYSIMSSEIEQFSTNVPK
SPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALK
KLKKMQRHQREKL
NT seq
5802 nt
NT seq
+upstream
nt +downstream
nt
atggcatttccattaaacgatcagatttatactaagtcttttactcctagggaatatcag
gtggaacttctctatgctgctttagaaagaaatattatagtatgcctaggaaaaaactgt
gaacaaatatttatcgttatcaaattgatacaggagttagcaaatagtaacagaagatct
ccctccgatggtggaaaacggtccatatatattttaagagacacagaacgatgtttaacc
aaagctgtatatatacaacagttgacagatttacgtgttcttgtttgcgattcggcaaca
tggcccaagttcgacgaaaaatttgctgagagtcaagtaatagtgatgacttcacatgat
tgcgccgaactgttgttgcagaagaaaattctacccagtcagataaacctggttataata
gatcagtgtcacaaagcaatcaacgatgaaaagttgaagtatgtgttgcaaaaactaacc
atttctgatggacctcgaattgttggttttgctgctccagtcttcaatcttacccacaaa
ctaggtagactggaagcagaaattaaacgagttgaaagtacttttcattgcactattgaa
accgctagcgacattttatcagtattacgatatagtccaaaaccaaaagagtatattgtg
gaattcaaatgtgcagaatatgaaggacttgatcggaccttagagaattgcgctttacat
gctatgaactttctatgtgatcaccgttatgatcctacagagatttatacagacgagttc
ctggaagacatacaaaaaatcccagatccaaaacaggaaccttgctcaatgatagaagac
tttttgtacatacttcggacactaggagcctggtgtgctaatcatgctgctctcgctctc
cttattcaagcagaaaagctaaaagtcaagacaccttacgagcgacattatctattattt
aatgtcgtagtatcgctatttgttaaaataagagcaatatgtgaaagtgaattcgaaaat
ttgagcgaaaaagaaaaattatataaatattccactccttgcgttcatcgactactgcat
atattgaaatgttatgcaccatctcataaaaaagaatcaattatagcagatgacaaattg
aataatggtatatctgcacacaagaacgaagctgacaatagccgaggagctgcacaacaa
tcaaaatctgttggaaacgtgaggaagcctcgaactggcttcaaaagaactccgaaatcg
ctgcgttatcctcgcagccaaattgatcctgatcttttatgcggggttatttttgtagat
aaaggatttacggcaaaaatattattctatctattgaatgatgcatgcaagcatgacaag
gaattacaatttctgtctccactttatacaatagaaaaaaatcctgaagatacaaattct
cctcacgatgtgggagttcaacatagaaaacaggaagaggttttgaaaagttttcgaata
catgaatgtaatttgttgatagctacatcaattttagaagaaggaatagacatacctaaa
tgcaacttcatcatgcggtacgacttccctaaaagttatcagtcttatgttcagtgcaaa
agcagagctcgtgccaatgatgccttgcatgtactttttgtaaacagaaacgtatcggat
gaatgcgtcacgcaactagcccggtatcactatatcgaaaagattctactattgaaatgt
gtaaataaagaacctatggaagaagaagaattctatgcggacaaatgtggcgatttacta
cctcattacaaaccattggacattgatggtgcaccaagcgtgtcctttaattctgcaatt
tctttagtgaataggtattgtgcaaagttacccagtgacacctttactcggttaacacct
gaatggacgatcgaaccaatcaccgttgataaccagcctatgtttgtttgttcaatacga
ttaccaataaactcgccggtaaaatacacattaacctcgtatccaatgccaaacagggca
atggcacggcgcttagctgctctgcaactctgtattgaactccacagagcaaatgaaatt
gatgattacttacttccaattggtaaagaaaactttaaagctaagccagaagacgcagaa
gtccctgcactgcccgatgaaacaacagctgatttttctgaagctcgtccaggaacgacc
aaacgaagacaatactattataaaaagattgccgaggcattaacagattgtagacctgtt
actatgaaacaatcttttttatatcatataagtatggtactgacatgtcccttaccagag
gaacaaaatacgagaggtcgtagaatatatccacctgaagactctgccataggctttggc
attttgacacttaaagaaataccaaagctatgcccatttccaatatatacaagatcggga
gaggtccatgtgaaactcaaattaagtaaacagatggttatactagaccctgctcaaatt
gagcgcgtagcagcgtttttgaattatacgtttacaaatgtactcaggcttcaaaaatat
ctaatgctttttgatccaaatgcctctgaacactcctactttattgttcctgtaaaaact
gtaactactgatgacggtcctgatattagcgtacattgggagtttctagaatgtatttat
gaaaataaaaatacagtaccaaatgaggtgccggaagaagtgcgtaaacaattccaattt
gatgcatctaaatatcatgatgcagttatcatgccatggtatagaaatcaggatcaacca
caatatttttatgtggcagaaatttgcaacaccttaaacccaagatcttcttttcctgga
gcagactatagtacttttgaagaatattacttgaaaaagtataatatacagatccagaat
ctcagtcaaccgctacttgatgtggatcatacatcagctagacttaattttctcacacca
agatatgtcaatcgtaaaggcgttgcattacctactagtagtgaagaaactaagaaggca
aaaagagaaaatttagaacagaagcaaatactagttgcagaactttgtgcaatacaccca
tttcctgcatctttatggcgacaagctgtttgtttgccatgcatactatacaggattaat
gcgcttcttttagcaaaccaaattcgatgtcatgttgcagaaatgataaatctggggcaa
caacatttagatccagaatttgaatggccacccttggattttggttggagtctagctgaa
gtcttgaagaaatcaaaggataacagtaaagtgacggatgtgaagactgaaataaaaata
acagaactcattccacctaaatctacaaatgcccgatttgttacaaaagaaaatggtgaa
tgtaatcatgaaaacgacgagaattatgttgacgaagacaatgaaatggaaatcggaacc
tggtcgaacgaaatggccataaatactatcgaattgagtagtgaaagtctagatatgttt
ccaccaaatataacgggcttacaagataccttctcatggaatgatattcgttatggttca
cccgcttgtgaatctgatctagatgcttacgatactgacgattcttccagcgaagcaata
ggtgattattcggatgagagcgacgaagatggtggaggattgcgaatatcgtttatggga
gataatgtcgcagaagctgttgaggatgagaatcgaattcgtaagagtgaaatcaataaa
agaattttagacttattagagctggaaagaagttatgacgaagatgtttggcattgcctt
gatgatatcgatgacgagatgattaaaaaacataaggaagctcaaaatgctgctaccttg
agcaacaaaaaacaaatcatagaaaacaaattgtttattccctgcgaccgagaaattgtt
ttgaagagacgattattgactgtgcaaaataagactgagacacttatacctgaatgtcaa
gaatatatattgaaagtggccaagtgctttacagacgaggttatcaacaccaaaactgtt
agagaacctgtgaagaaggaattcaacaaatcctcgccatcagaagacgtggaaagcact
ctatttagttttgattaccagccaaatcttaaaggacatcctggaccaagtcctagtctc
atcctacaagcgttaacgatgtcgaatgctaatgatggtattaatctagagagacttgaa
acaattggagattcttttttgaagtacgcaataacaacttatttgtattgcacgtacgat
aatatacatgaaggaaaactgagtcacttaagatcaaaacaggtcagcaatttgaactta
tacagattaggccgtcaaaaagttcttggcgagagtatgattgcaactaagtttgaaccc
catgataattggcttccaccctgttattatgtacctcgagaactagagcaagccttgata
gaatctggagtgccagctaacttatggaatcaagcagatattccagttctgagagctgtc
aatcagaatgagatatgccaacttgttaaagaaaccgagcataagcttggaattatgcga
accgaacttgacaaaaatagcaatgattatgtcaccgatttcgaaaatttacgctgtttc
attccgtataatctcattacgcaacacagcattccagacaaaagcgttgcggattgcgtg
gaagctttaataggggcttatcttattgcatgtggacctcgaggagctttcttgtttatg
gcctggctcggcattcatgtcttgccatttgaagaggtttccattgtttctgcaaatgaa
cctgttgataaacctccagggagttcgacttacgttaaaggaacgaatggaaatggagaa
actgtttggacacatatacgatatggaaatttggatgagccgcagtgtcctctcttgagg
catgttccaaatcctgaacaagagttgagtatgatgttggatggctacaatgaactcgaa
gcaagtatgggttataaatttcgcgacccaagttatttactgcaagcatttacacatgca
tcttatcagccgaataaattgacagattgctaccaacgattggagtttcttggtgatgca
gttttagattatttgataacaagacatttatacgaggattcaaggcaacattctcctggt
gctctgacagatctgagatcagctcttgtgaataatactatattcgcttccttggcagtc
agatgtggatttcataaatattttcgccatctttcaccaggattaagtgtggttattgat
cgatttgtgagaatacaagaggaaaatggtcactctattagcgaagagtactatttgatc
ggggaagatgaatgtgaggaggccgaagatgttgaagttccgaaagctttgggtgatgtt
tttgaatctttggctggagcgatttacttggacagtggtatgtcgctcgatgccgtgtgg
agagtatattatagtataatgagctctgaaattgaacaatttagtacgaatgtaccaaag
tctccgataagagaactattagaattagaaccagaaacagcaaagtttggaaaacctgag
aaattggctgatggacgtcgggtccgagtgacagttgatgtatttgggaaaggttctttc
aaaggaattgggagaaattaccgtattgctaaatgtacagctgctaaatgtgcgcttaag
aaactaaaaaaaatgcaacgacatcaaagggaaaaactgtga
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