Athalia rosae (coleseed sawfly): 105685879
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Entry
105685879 CDS
T09776
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03022
Basal transcription factors
aroa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105685879
09124 Replication and repair
03420 Nucleotide excision repair
105685879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aroa03021
]
105685879
03400 DNA repair and recombination proteins [BR:
aroa03400
]
105685879
Transcription machinery [BR:
aroa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105685879
DNA repair and recombination proteins [BR:
aroa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105685879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Voldacs
Motif
Other DBs
NCBI-GeneID:
105685879
NCBI-ProteinID:
XP_012255748
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All DBs
Position
5:6327484..6333609
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AA seq
560 aa
AA seq
DB search
MTTSSEDVLMQVGQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
AKIQLQVVLHDGSSSTFHFVNRNGQEAQVKDRDEVKELLQQLLPKFKRKVNKELEEKNRM
LQENPTLLQLYRDLVITQVISSEEFWAQHAAEYTQAKKSQRQDIGVNGAFLADIKPQTDG
CNGLKYNLTVDIIECIFKTYPAVKKKHIENVPHKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDIQTGINDCLVDITSFEDKSIDENYGTGSGKADKPSGNIVHQSM
IKRFNQHSIMVLKASTANSFQDQGQPHLNGSTTSTIKVQSMNCNDDRVKTKKLRIQEKLV
YDDLNTSSDANTKLAAPLNLSHVDRYLHGPIPGSGSAEASNEELQATLTQLRREANNWVN
GAHLPRQAATSLVSPAAAVSALGELTPGGALMKGFREDSLGQLIPKDLEKELRNMYMCTC
ELLRHFWKSFPPNTPQLEEKAVRMHEALHRFHSARLKPFEDRIQREFSAVSQHLTSHLNQ
LLNTAYRKFAVWQQRKMQMR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgactacttcttcagaagatgttttaatgcaagtgggtcaagttcgatataaaaaaggc
gatggtacactttatgttatgaatgaaagaatagcttggatgctggacaatagggacact
gtatcggtcagccacaaatacgctgatattaaattacaaaaaatatcgccagaaggcaaa
gcaaaaattcagcttcaagttgttcttcatgatggatcctcgtcaacgtttcattttgtg
aatagaaatggtcaagaagcacaggtcaaagaccgcgatgaagtcaaagaattattacag
cagttgttgcccaaatttaaaagaaaagtcaacaaggaattggaagaaaaaaatagaatg
ttacaagagaatccgacgctactacagctttatcgagacttagtaattacacaagttatc
tcctctgaagaattttgggctcaacatgctgcagagtacacccaagctaaaaagagtcaa
cgacaagatataggggtgaatggggcatttttggctgatattaaaccacagacagatggt
tgtaatggtttgaaatacaacttaacagtagacattatcgaatgtatattcaagacatat
ccagcagttaaaaaaaagcacattgaaaacgtcccgcacaaaatgtcagagtcggatttt
tggacgaagttttttcagtctcattattttcaccgggatcgtataaatgcagggaccaaa
gatctatttaccgaatgtgccaaaatagatgatcaagagttaaagaaggatattcaaaca
ggaatcaacgattgtctggtcgatatcacatcctttgaggataaatccatagatgaaaat
tatggtactggatcaggcaaagcagataagccttctggcaacattgtacaccaaagcatg
atcaaaaggtttaatcaacatagtataatggtgttgaaagctagcactgccaatagtttc
caagatcaaggtcaaccacatttgaatggatcaacgacgtcgacgatcaaagttcagtca
atgaactgcaatgacgaccgcgtcaaaaccaaaaaacttaggatacaagaaaaattagta
tacgatgatctcaataccagttccgatgcaaatacgaaattggcggcaccgctcaatctg
tctcatgtggacagatatttacatggcccaataccaggttctgggagtgcggaagctagt
aacgaagaattgcaagcaaccttaacacaactccgaagagaagcaaataattgggtaaat
ggagctcatctaccaaggcaagcagcgacatccttagtaagtccagcggctgcagtctct
gcattaggagaacttacgcctggaggtgctcttatgaaaggttttcgagaggatagttta
ggacagttaattccgaaggatttggagaaagaattgcgtaatatgtatatgtgtacgtgc
gaattactaaggcacttttggaaaagctttccaccaaacactcctcagttggaggaaaag
gctgttcgaatgcacgaggctctacacagatttcactctgccaggttgaagccatttgag
gatcgtatacaaagggagttttcggcggtcagtcaacacttgactagtcacctgaaccag
cttttgaacactgcttataggaaatttgcagtttggcaacaaagaaaaatgcaaatgagg
tag
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