Athalia rosae (coleseed sawfly): 105686305
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Entry
105686305 CDS
T09776
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aroa
Athalia rosae (coleseed sawfly)
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aroa03016
]
105686305
Enzymes [BR:
aroa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105686305
Transfer RNA biogenesis [BR:
aroa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105686305
Prokaryotic type
tRNA splicing ligases
105686305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
105686305
NCBI-ProteinID:
XP_012256389
LinkDB
All DBs
Position
3:complement(3350108..3353190)
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AA seq
506 aa
AA seq
DB search
MVVRQYQEELQYLEKINDYSWRIKKGFQPNMNVEGIFYVNSTLERLMLEELRFSCKPGSV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMNDPKAIVSPGGVGFD
INCGVRLLRTNLYEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMGAKDLEEALEMGMDWS
LREGYIWAEDKEHCEENGRMLNADPSKVSTRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KWAASKMGIEDKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIQTNDRQLACAHIN
STEGQDYLKSMAAAANFAWVNRSSMTFLTRQAFAKQFNMSPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSFVLTGTEEGM
QQTFGSTCHGAGRALSRAKARRNLDFKDVLAKLEESGISIRVASPNLVMEEAPESYKNVI
DVVNTCHAAGISRKSIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcgacagtatcaggaagaactacagtacctggaaaaaatcaatgattattct
tggagaattaaaaagggatttcagcccaacatgaatgtcgaaggtatattctatgtgaat
agtacattggaacgtctgatgcttgaagaattacgcttctcctgtaagcctggatctgtt
ggtggatttcttccaggagtaaaacagatcgctaacgtagctgctttaccagggattgtt
ggcagatctgtaggtttacccgatgtccactctggatatggatttgccatcggtaatatg
gcagcctttgatatgaatgatccaaaagcaatcgtgtcccctggaggagttggatttgac
ataaactgtggtgttagattgcttagaacaaacttgtacgagaaagatgtccagccaatc
aaggaacaactagctcagagcatgtttgatcatatcccggttggagttggatcaaaggga
attataccaatgggtgccaaggatttggaagaggccttggaaatgggaatggattggtct
cttagagaaggatatatttgggcggaggataaagagcattgtgaggaaaatggtcgtatg
ctgaatgctgatccatcaaaagtatcgacaagggccaaaaagcgcggtctgccacagtta
ggcacattaggtgctggtaatcactatgctgaaatacaagtggtggaagagatttatgac
aaatgggcggccagcaaaatgggcatcgaagataaaggccaagtctgtgttatgattcac
tctggaagtagaggatttgggcatcaagtggctactgatgcgcttgtacaaatggagaaa
gctatgaaacgtgacaacatccaaaccaatgatagacagctagcttgtgctcatatcaat
tctaccgagggtcaagactatttaaagtcaatggctgccgctgctaatttcgcctgggtc
aatcgcagctccatgacgtttcttacgcgacaggcttttgcaaagcagttcaacatgtct
cccgacgatttggatatgcatgtgatttatgacgtatcgcataatattgcaaaagttgaa
gaacacattgtcgatggaaagcaaaaaacattattggttcacagaaagggttcaacgcga
gcatttccaccacaccatcctctcattccagtcgattaccagttaactggccaacccgtt
ttaattggaggaacaatgggcacatgtagctttgttcttacgggaaccgaagaaggcatg
caacaaacttttggttcaacttgtcatggagcggggcgagcattgtcgcgtgcaaaagca
cggcgtaatctggatttcaaagacgtattagcaaaacttgaagaatctggtatatcaatc
agagtggcatcgccaaacctggtcatggaagaggcacctgaatcctacaaaaatgtaatt
gatgtagtgaatacttgtcacgcagctggaatatcacgcaaatccatcaaattaaggccc
attgctgtcattaaggggtag
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