Athalia rosae (coleseed sawfly): 105686978
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Entry
105686978 CDS
T09776
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105686978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105686978
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105686978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_IFT140_1st
CSTF1_dimer
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_NUP159_NUP214
Beta-prop_NOL10_N
Beta-prop_VPS8
Beta-prop_WDR75_2nd
Beta-prop_IFT140_2nd
Beta-prop_SPT8
PROPPIN
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
105686978
NCBI-ProteinID:
XP_012257699
LinkDB
All DBs
Position
1:complement(11593754..11596124)
Genome browser
AA seq
397 aa
AA seq
DB search
MIQAEPPCPPSDRLLHLMLIGAAHEPDRTKKEVTTPNIPTFANIDNSLGPGLDLEFETEA
QTQAPEPAQYETAYVTSHKGNCRAGAFSADGQLIATGSVDASIKILDVDRMLAKSAPDEM
APGDQTGGHPVIRTLYDHLEEVTCLEFHPRDPILVSGSRDFTVKLFDFSKASVKKAFRTI
TDADQIRCLSFHPTGDFLVVGTNHPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDA
KTYASAGKDGSIKLWDGVSNRCINTFVKAHDGYEVCSVTFTRNGKYLLSSGKDSLIKLWE
LSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSL
GHNGPVRLIVHSPTAPAFLTCSDDFRARFWFRRMPTH
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgatacaagctgaaccaccatgtccaccttcggatagactgctccacttgatgctcatt
ggtgctgcacatgaaccagaccgtacaaaaaaagaagtgacaacacctaatattccaaca
tttgcaaatattgacaattcacttgggcctgggctggatttagagtttgaaaccgaggct
caaacacaggcacctgaaccagcacagtatgaaacagcgtatgtcacatcacacaaagga
aactgcagagctggtgcgttttctgctgatgggcagctaatcgctacaggctctgttgat
gcttctataaagatcttagacgttgatagaatgcttgctaaatctgcaccggatgaaatg
gcacctggagaccaaacgggtggacatcctgtaattagaacgctgtatgatcatttggag
gaagtgacgtgcttagagtttcatcctagagatccgattctagtttctggaagcagagat
tttaccgtcaagttatttgacttcagtaaagccagtgttaaaaaagcgtttcgtactata
acagatgctgatcaaattcgatgtctgtcctttcacccaacaggtgattttcttgttgtt
ggaactaatcacccagttgtaagattatatgacgttaataccgcgcagtgtttcgtctgt
agcataccaagtcatcagcatactgcaggtataacaagtatcaaatattccccggatgct
aagacttatgcctcagctggtaaggatggcagtatcaaattatgggacggtgtgtcgaat
cggtgtataaatactttcgtcaaagcacacgacggctatgaagtctgctctgtaactttc
acaaggaatggaaagtatttgctatcatctggaaaagattctttgatcaaattatgggaa
ttatcaacaagcagatgtttgattgcttatacaggtgctggtacgacaggtaaacaggaa
cataaagctcaagcaatatttaatcatacggaagattatgtgatgttccctgatgaggct
acgacttctctttgcgcgtggaattctcgaaatgcatctagaaagcagcttctttcattg
ggacacaatggtccagttcgtctaattgtacattccccgactgcaccagcatttttaact
tgcagtgatgattttagagcgagattctggtttagaagaatgccaacacattga
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