Athalia rosae (coleseed sawfly): 105687630
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Entry
105687630 CDS
T09776
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105687630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105687630
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105687630
U7-dependent histone pre-mRNA processing factors
105687630
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Lactamase_B
MITRAC7_Phoenixin
Motif
Other DBs
NCBI-GeneID:
105687630
NCBI-ProteinID:
XP_012258842
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Position
4:14901860..14905287
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AA seq
737 aa
AA seq
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MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL
SYPDPLHLGALPYLVGKCDLTCPIYATIPVYKMGQMFMYDMYQSRNNMEDFDLFTLDDVD
AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK
ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVGVDTA
GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN
NPFQFKHLQLCHSMAELNQVPSPKVVLASTPDMECGFSRELFLQWCSNPQNSIILTSRSS
PGTLARDLVENGGNRNITLEIKRRVKLEGAELEEYQKKQKIKQEQIKQEAMETADVSSES
EDEIEVGGGKGKHDLLVKQESKPGFFKQSKKQHPMFPFAEEKIKVDEYGEIIRPEDYKIA
DATPELEDNKENVEVKQEDTVPQPEIAADIPTKCIQLTRVVTVNASVTYIDFEGRSDGES
LQKILAQLRPRRVVLVRGSQKDTEVLAQQAQAAGARVFIPGRGETLDATTETHIYQVRLT
DALVSGLNFSRGRGETEIAWIDALMTARDQVRRDAMIEGDASEAVDQKDQILTLEPLPLN
EVPGHQTAFINELKLSDFKQILNRSNIPSEFSGGVLWCCNNTIAVRRHEAGKVILEGCIS
EDYYKVRELLYEQYAIV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctatcattaaactacatgccatttctggggcaatggatgagtcccctccgtgc
tatatcctgcaagtagatgaactccgcatactccttgattgtggatgggatgaaaatttt
gatcaagatttcattaaggaacttaagagacatgtccatcaaattgatgctgtactgcta
tcgtatcccgatccattacatttaggtgctctgccatacctagttggtaaatgcgacctc
acctgtcccatctatgcaaccattccagtttataaaatgggtcagatgttcatgtatgat
atgtaccagtcgcgcaataatatggaagactttgatttatttaccctggatgatgttgat
gcagcattcgataaaatagtccaattaaagtacaatcagagtatttcaatgaagggtaaa
ggctatggagtcacattgactccattacctgctggccatatgattggtggtactatttgg
aagattgttaaagttggtgaagaggacattatttatgcagttgatttcaatcacaagaaa
gaaagacatttgaatggctgtgagctagagagacttcaacgaccctctttgctgatcaca
gatgctttcaatgcaacttatcagcaagccaggcgaaggacaagagatgagaagcttatg
acaaatattttacaaacacttcggggtggtggaaatgtcctggtgggcgtggataccgca
ggtagagtccttgagttggcacatatgctggatcagctttggagaaataaagaatccggg
ctgctcgcttactcccttgcacttctgaacaatgttagctacaacgttgtggaatttgct
aaatctcaaatagaatggatgagtgataagttgatgcggagttttgagggagccagaaat
aatcctttccaattcaagcatttgcagttgtgtcacagcatggctgagctaaaccaagtt
ccaagccctaaggtggttctagcaagcactcctgacatggaatgtggattttcgcgggag
ttatttttacaatggtgcagcaacccacagaacagcataatactgactagtagaagttca
ccaggtacattggccagagatttagtagagaatggcggtaacaggaatattactttagaa
ataaaaaggcgagtcaagctagaaggggctgagctagaagaatatcagaagaagcaaaaa
ataaagcaggagcagataaaacaagaagcaatggaaacagcagacgttagttccgaatct
gaggacgaaattgaagttggaggtggaaaaggaaaacatgatttgttggtcaagcaggaa
agcaaaccgggctttttcaagcaaagcaagaaacagcatcccatgtttccttttgcagag
gaaaaaatcaaagtcgacgaatacggggaaattattaggccagaagactataaaatagcg
gatgccacacccgaattggaagataacaaagaaaatgtagaagtgaaacaagaagacaca
gtgccgcagccggaaatcgcggcagatatccctacaaaatgtattcagctcacacgcgtg
gttacagtaaacgcatcagtaacttacattgacttcgaaggtcgctccgatggagaatcc
ctccaaaagattcttgctcaactcagaccaagaagagtcgtcttggtcaggggctctcag
aaagacaccgaagttcttgcccaacaggctcaagctgctggagctcgggtgtttattcct
ggcagaggggaaactctagatgctacaacagaaacacacatctatcaggttcgcctgacc
gatgcattggtcagtggattgaatttctccaggggtagaggggaaactgagatagcgtgg
attgatgctttgatgacagctcgcgatcaagtacgccgtgatgctatgattgagggagat
gcttctgaagctgtcgatcagaaggatcagatactgaccctagaacccctaccgctcaat
gaggttcctggacatcaaactgctttcatcaatgaactgaaattatcagacttcaaacaa
attttaaatcggagtaacattccatcagaatttagtggaggtgttttgtggtgctgtaat
aacacaattgcagtaagaaggcacgaagcgggcaaagttattcttgagggatgtatttca
gaagactattacaaagttcgagaactactgtatgaacaatatgctattgtttga
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