Athalia rosae (coleseed sawfly): 105688295
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Entry
105688295 CDS
T09776
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105688295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aroa03021
]
105688295
03036 Chromosome and associated proteins [BR:
aroa03036
]
105688295
Transcription machinery [BR:
aroa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105688295
Coactivators
SAGA/TFTC/STAGA complex
105688295
Chromosome and associated proteins [BR:
aroa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105688295
STAGA complex
105688295
TFTC complex
105688295
SAGA complex
105688295
SLIK complex
105688295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_like
PEP5_VPS11_N
Beta-prop_Vps41
RMC1_N
Cytochrom_D1
Beta-prop_WDR35_TULP_N
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
105688295
NCBI-ProteinID:
XP_012259873
LinkDB
All DBs
Position
4:19648866..19652123
Genome browser
AA seq
652 aa
AA seq
DB search
MDNDKSTMLAVLQLLRKYNLKGTEDLFRKEANLTDISAEDSQQTESEVSSVLSAYKSEGD
PALYEKAYTELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSGEAKQFIKKFSGN
LEEYYQEDLKKLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLL
NIIQEHLYFDMYEGVARNKQQIEATSGAIVGEATRQDNKAKVYYGLLKEPDIQCVPPAEE
EEDDAGGEGGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKMEKIKALREA
SKRVILGPDSLPSICFYTVLNSIHGVTAAEVAEDSSLLAVGFSDSAVKVWSLVPQKLRLM
KSGDQLQDIDREADDVLVRMMDDRTAESSRTLYGHSGPVYSLSFSPDRNLLLSSSEDTTV
RLWSLHTWTCVVCYKGHLFPVWSVRFSPHGYYFATGSHDKTARLWATDAHQPLRIFAGHY
SDVDVVQFHPNSNYVATGSSDRTVRLWDCVNGTQVRLMTGHKAPIYSLAFSAEGRFLATA
GADSRVLIWDLAHGHLVAALASHTATIHCLCYSRDGNILVSGSLDSTLKLWDFTKLAEEM
SLEDVNVSHNPDVKTCVDTYLLRTFPTKNSPVLTLHFSRRNLLLSVGMFEGT
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggataatgataaaagtacgatgcttgcggttttgcaactgttgagaaaatacaatttg
aagggcactgaggatttattcaggaaggaagcaaatctgacagatatatcggcagaggac
agtcaacaaaccgaatccgaagtgagcagtgttttatctgcttacaaaagcgaaggtgac
ccagctctttatgaaaaagcttacaccgaactaaaaaagtttgttgaaggagccttggat
atttacaagcatgaactgggcacgatattatatccagtcctagtacacatgtacctggaa
cttgtgtacaacaatcattctggagaagcaaaacagttcatcaaaaagttcagtgggaac
ctggaggaatactatcaagaggatttgaaaaaattatctaatgtaacaaagcgagaacaa
atggctggtaacgagctcaccgatactttcaaatctaaccaattcattataaggatgtca
cgtgacactctctctattctaaaacgtcatcttcaggaaaaaaagcatagcgtgctgctc
aacattatccaggaacatctttactttgatatgtatgaaggggtagcgcgaaataaacaa
caaatagaagctacatcaggtgctatagtcggagaagccacccggcaagataacaaagca
aaagtctactacggacttttgaaagaaccagatattcagtgtgtcccaccagcggaagaa
gaggaagatgacgcaggtggagaaggtggagacaaaccgaaaaagaagaaggctaagaaa
gatccgcttttctccaaaaaaactaagtcagatcccaatgcacctccggttggaagaatg
ccactacctaatctgaaagatgcagataagatggaaaaaataaaagcattaagggaggct
tccaagagagtaattttgggcccggacagccttccatcgatatgcttctatactgtgttg
aattcaatccatggcgtgactgccgcggaagtagccgaagactcgagcttgttagcagtt
ggtttcagtgattcagcggtcaaggtttggagtttggtaccgcaaaaattgaggctaatg
aaaagcggagaccaactgcaagacatcgaccgcgaagctgacgatgtattggtaagaatg
atggacgatcggacagccgaatcgtcgcgtactttgtatggacacagcgggccagtttat
agtttgtcgttcagtcctgataggaatttgttactctcctcttcagaggacacaacagtt
agattgtggtcactccacacatggacatgcgtagtctgttacaagggtcatttattcccg
gtctggtctgtccgattttcacctcatggatactactttgcaactggctctcatgataag
actgccaggctttgggcaactgatgctcaccaacctcttcgcatatttgcaggccattat
tctgatgtcgatgtagttcagtttcacccaaattcaaactacgttgcaacaggatcgagt
gacagaacagtaagactttgggactgtgtaaatggcactcaggtgcgcttgatgacaggc
cataaagctccgatatattctttggctttttcggccgagggtcggtttttggcgacagcg
ggtgcagacagccgggtgttgatttgggacctggctcacggacatttagttgctgcattg
gctagccacacggcaacgatacactgtctttgttacagtagagatggtaatatcctggta
tcaggatcacttgattcgacgctcaagctttgggactttactaagctggcagaagaaatg
agtttggaggacgtcaacgtctcccataaccctgatgtaaaaacgtgcgtagatacttac
ctactacgtacatttcctaccaaaaattctcctgttctcaccctccacttttctcgtagg
aaccttcttctatcagtaggtatgttcgaaggaacctaa
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