Athalia rosae (coleseed sawfly): 105688764
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Entry
105688764 CDS
T09776
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105688764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aroa03041
]
105688764
Spliceosome [BR:
aroa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105688764
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
Ge1_WD40
Beta-prop_WDR19_1st
WD_LRWD1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
105688764
NCBI-ProteinID:
XP_012260721
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Position
1:complement(6004838..6007801)
Genome browser
AA seq
526 aa
AA seq
DB search
MSDDEDLVYVKKQKTLHYGSLEETERARLAAASVESSDDEKDNGSPTDTPTALTALGNSH
APNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLGEPICLFGEGPA
DRRSRLRELLASLGEDAIRKKHDEEERPTHQTERDAESTWYHEGPDSLQIARSWIAAYSL
PRAKARLDNSRLELELPGATRTARRQELLKKLQALSIYCSQIGDSRPISFCQFSPNSKLL
ATSSWSGLCKIWTVPDCSIARTLRGHTCNVSCIVFHPQATLTQEVIGENASPTCALASCA
SDGSVKLWSGGDSEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCHDASWRLWDLEQQAEV
LHQEGHARAVHCISFQCDGSVVSTGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGVDFSPN
GYHLATASEDNSCKIWDLRKRSCIYTIPAHTNLLSDVKYQKTEGQYLVTASYDNTAKIWS
NKTWQPLKTLPGHDGKVMCCDVSPDHKFIATSSYDRTFKLWAPENM
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgatgaagatttggtgtacgtaaaaaaacaaaaaactttgcattatggatca
ctggaggagacggaaagagcaaggctcgctgcagcctcagttgagtcttctgacgatgaa
aaggataatggtagccctacagacacaccaaccgctctcactgcacttggaaactcccat
gccccaaatgaatatatggaacttgaagatgaaatgtctaaagacagacaagctctactt
gaagaatttgaaaggagaaaaaaagctagacaaatcaacgtgtccactgatgattcagag
gtgaaaaaaaacctacgccagttaggtgaaccaatatgtttgtttggagaaggacctgca
gatagaagatctagattgagagaattattagccagtctaggtgaagatgcaattagaaaa
aagcatgatgaagaagaaagacccacgcaccagactgaaagagatgcagagtcaacgtgg
tatcatgaaggacctgattcacttcaaatcgctcgttcctggatagcagcttattctctt
cctagagcaaaagctcgactggataattcaaggctggaattagagctgccaggagcaaca
agaactgcacgaagacaggagcttttaaaaaaattacaagcactcagcatttattgctct
cagataggagatagtcgtccaatatctttctgccagtttagtcctaattcgaaattatta
gccacctcgtcgtggtctggattatgtaaaatctggactgtaccggattgctccattgcc
aggaccctcagaggccacacttgcaacgtgagctgcatagtttttcatccgcaggcaacc
ctaacacaagaagttattggagaaaatgcatcacccacttgtgctttagcaagctgtgca
tcagatggcagtgttaagctatggagtggaggcgatagcgaagaaccactagcagaagtc
gaaggtcatgaacctcacagagtatcaaggatagcttttcacccatcaggtagattttta
ggaacttgctgtcacgatgcttcgtggcggctatgggaccttgaacaacaagcggaagtt
ctccatcaggaaggacacgctagagccgtacactgcataagttttcagtgcgacggcagc
gtagtttccaccggtggacacgactcctttgggcgtgtatgggatttgcgaacaggtcgt
tgtataatgttcatggagggtcacctgaaatcaatttttggtgttgatttttcaccaaac
ggttatcacctggcaacggctagcgaggacaattcctgtaagatttgggacttgagaaaa
aggtcgtgcatttatacaataccagcgcatacgaatttattgtccgatgtaaaatatcag
aaaacagaggggcaatatttggtgaccgcatcttacgacaacaccgcgaaaatatggtct
aacaagacctggcagccgttgaagacattgcctggacatgacggaaaagttatgtgttgt
gacgtgtcccccgatcacaagttcatagcgaccagttcgtacgaccgaacgtttaagcta
tgggcccctgaaaatatgtga
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