Athalia rosae (coleseed sawfly): 105689622
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Entry
105689622 CDS
T09776
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
aroa
Athalia rosae (coleseed sawfly)
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aroa04147
]
105689622
00535 Proteoglycans [BR:
aroa00535
]
105689622
00536 Glycosaminoglycan binding proteins [BR:
aroa00536
]
105689622
Exosome [BR:
aroa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105689622
Proteoglycans [BR:
aroa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
105689622
Glycosaminoglycan binding proteins [BR:
aroa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105689622
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
105689622
NCBI-ProteinID:
XP_020710043
LinkDB
All DBs
Position
7:11537353..11603600
Genome browser
AA seq
1183 aa
AA seq
DB search
MLHSFSTLVVISAALTTVQNQGFADLYGDNKNDLEWDLLDAMPIPSSSERYLYYDIGLDG
FPVYGFRPGADVKKPYRLHLPEKLPAEFTVVANFKTLSTGPSYLFAVLNSYDTVVQLGLR
ISDGPGTNQNITLLYTNSDLHSLSDEVATFTVNRLVKKWAEVILKVTTTDITLYFNCHEF
GKQRVTRIPSELVFDTASKLYIGQAGPNIQGNFNGTLQTLKIYSGHPQDLVRCDSDIASF
GEFSGSGSGDDEYDPIDRLFIVDDEDEGAEVKPPPPFIAPPPPNPESKGLKGEKGDKGEK
GESIQGPPGSPGPPGPPGISGTILENPDGGKAGPPGPQGPKGDTGTCSCNTSALMSSFTM
PKMIQGEKGEPGIPGSEGKQGQMGLTGAAGPPGERGQQGAVGPKGNTGNVGAQGPEGPQG
QKGEPGRDGVPGEKGAEGPPGPPGKGEISGYDPSWKPRSIIYRTEGITMRPGLPGQKGDP
GTPGSSGPKGEPGVTGVKGSKGELGQKGVKGDNGKDGAVGVQGFKGEPGAPGAAGLPGAP
GENARPAEKGSKGDAGPEGKMGPAGPPGPPGPKSEGGINVGEIGPGEKGDKGDKGDLGYK
GDLGLKGEKGDTGDSGPAGIPGVNGIQGPQGNKGEPGRDGTPGASGTSGMKGERGEQGPP
GVTAIAGPGDYVTIKGEKGAEGKRGRRGRPGAPGPVGPPGKSGINGEIGLPGFMNGKGRP
GQPGVPGNPGATGEKGNKGDPGAPSPYGLSVGVKGDKGDPGFPGIPGTPGRDGQRGHPGP
PGPAGPASQGKFIPVPGPPGPPGPPGSPGLSLIGQKGEPGIGRSHIFMERGDGYYGSRQG
PRSSLDELKALRELKQLKELKEHYGSGTIATRGPASESTTKIVPGAVTFQNTDAMTKMSA
VSQVGTLAYIIDEEALLVRVNNGWQYIALGSLLPITTPAPPTTAPPPVKAPFEASNLINQ
IPLKTDGTGWYPKMLRMAALNEPYTGDMHGVRGADYACYRQSKRAGLTGTFRAFLSSRVQ
NVDSIVRFADRDLPIVNIKGDVLFNSWKEMFNGDGAYFSQSPRIYSFNGKNILTDDFSWP
EKVAWHGSHKLGDRAMDTYCDAWHSSSSDRFGLGSPLNGERLLEQVRYSCDNKFALLCIE
VTSQTTRRRRETDEDYQENHQLIENLELNEEDYRKHLEELMDD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgttgcatagtttcagcactttggtggtcatctccgcggcactgactacagtccagaat
cagggattcgcggatctgtacggagacaacaaaaacgatttggaatgggaccttctggat
gctatgccgattccatcatcgtccgaaagatacctttactacgatattggattggacgga
tttccggtatacggatttcgtccgggagcagatgtcaaaaaaccctacagacttcatctg
ccggaaaaattaccggctgaatttaccgtcgtagctaattttaaaacgctatcgacagga
cccagctacttattcgctgtactcaactcgtacgataccgtagtacaactcggtctaaga
atatcggatggtccaggaacgaatcagaacataacacttttgtacacgaattcggatctg
cattcgctttcggacgaggtggcaactttcacggtaaatcgtttggtcaagaaatgggct
gaagttatattaaaagtaacgacgaccgatatcacactctatttcaattgtcacgagttt
ggaaagcaaagagtcaccagaattccaagcgaactcgtattcgacaccgccagtaaactc
tacatcggacaagccggtccgaacattcagggaaattttaacgggacacttcaaacgctt
aaaatttattcaggacaccctcaggatctggtgagatgcgatagcgacattgccagtttt
ggagaattttcaggttctggttcaggggacgacgaatacgacccaatagatcggctattc
atagtggacgatgaggatgaaggtgccgaggttaaaccacccccaccttttatcgcacca
cccccaccaaatcccgagtccaaaggattgaagggagaaaaaggcgacaagggagagaaa
ggagaaagtattcaaggacctccgggatcgcctggaccgcctggaccgccaggaatatct
ggaaccatcctggagaatccagatggggggaaagcgggtcctccgggtccacagggacca
aaaggggacacaggtacgtgttcttgtaacacatcggctctaatgtcctccttcacgatg
ccgaaaatgatccagggagaaaagggagaacctggtataccggggagcgaagggaaacaa
ggtcaaatgggattaacgggtgcagctggacctcctggtgagcgaggtcaacagggggcg
gtgggtccgaagggcaatacaggtaacgtcggagctcaaggtccggaagggccacagggt
caaaaaggagaacccggcagggacggtgttcccggagaaaaaggggccgaaggtccaccc
ggtcctcctgggaagggtgaaatttccggatacgatcctagttggaaaccaagaagtata
atctacaggacggagggaataacgatgcgtcctggacttccggggcaaaaaggtgatcct
ggtactcctggtagttccggtcctaaaggagagccaggagttacaggagtgaagggatca
aaaggagaactcggtcagaagggtgtaaagggtgacaacggtaaagacggtgctgtaggg
gttcaaggatttaaaggtgagcctggggctcccggagctgccggacttccaggtgctcca
ggggaaaacgctagaccagccgagaaaggtagtaaaggagatgctggaccggaagggaaa
atgggaccggcaggaccccccgggccccccggaccgaagtcggaaggaggaatcaatgtt
ggggaaataggtccaggtgaaaaaggcgacaagggagacaagggcgatttgggttataag
ggcgatctgggtctgaagggtgaaaaaggtgataccggagattcgggaccagcgggaatt
ccaggcgtcaacgggatccagggtcctcaaggcaacaagggagagcccggaagagacggg
actccaggtgccagcggaacatcgggaatgaagggagaaagaggagagcaaggacctcca
ggagtcaccgccattgctgggccaggagattacgttacaattaagggagaaaaaggagct
gagggaaaaagagggaggagagggagaccgggagctccgggacccgtcggaccaccggga
aaaagtggaatcaacggggaaatcggacttccaggattcatgaatggaaagggtcgaccc
ggacaaccaggagtccctggaaatccaggagcaacgggagaaaaaggaaacaagggagat
ccgggcgcaccgagtccttacggactttcagttggggttaaaggagataaaggcgatcca
gggttccccggaattcctggaacaccgggtcgcgatgggcagcgaggtcatccgggaccg
cctggtccggctggtccagcttctcaagggaaattcattccggttcctggaccgccagga
cctcctgggcccccaggatcaccaggattatctttgatcggtcaaaaaggagaacccgga
atcgggagaagccatattttcatggaaagaggggacggttattacggctctagacaagga
ccaagaagcagtttagatgaattaaaagctctcagagagttgaaacagctgaaggaactc
aaagagcattacggatcgggaactatcgctaccagaggtcctgcttcagaaagtacaaca
aaaattgtccccggagcggtgacgttccaaaacaccgacgcaatgacaaaaatgtcggct
gtcagtcaagttggaactttggcttacataatagacgaagaagcgttgctagtgagggtg
aataacggatggcaatacatcgctctgggctctctgctccccataacaactccggctcca
ccgaccacagcaccacccccggtgaaggcaccgttcgaagcgtcgaatctgataaatcaa
attcctttaaaaactgacgggacaggatggtacccgaaaatgctgcgaatggctgcactc
aacgaaccttacacgggagatatgcatggcgttaggggtgcggattacgcctgttatcgc
caatcgaaacgtgcaggtctaacgggaactttcagagcatttttgagctcaagggtacaa
aatgtcgacagcatcgtcagatttgcggatcgagatctgccgatagtcaatattaagggt
gacgtgctgttcaattcatggaaagaaatgttcaacggtgacggtgcctacttttctcaa
agcccaagaatctacagttttaacgggaaaaatatcttaacggatgatttctcctggccg
gagaaagtagcgtggcacggttctcacaaattaggtgatagagcaatggacacttactgc
gacgcgtggcattccagtagttctgatcgttttggattgggttcgccgttgaacggagaa
cgtttgttggaacaagtccgatattcctgcgataacaaattcgctctactctgcatagaa
gtaacgagtcagacgacgaggcgtcgtagagagaccgatgaggattatcaagaaaatcat
cagctcatcgaaaatctggaactgaacgaagaagactatagaaaacatttggaagaactg
atggatgattaa
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integrated database retrieval system
