Athalia rosae (coleseed sawfly): 105690264
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Entry
105690264 CDS
T09776
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105690264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105690264
03041 Spliceosome [BR:
aroa03041
]
105690264
03009 Ribosome biogenesis [BR:
aroa03009
]
105690264
03016 Transfer RNA biogenesis [BR:
aroa03016
]
105690264
Enzymes [BR:
aroa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105690264
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105690264
Spliceosome [BR:
aroa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105690264
Complex C
U4/U6.U5 tri-SnRNP related factors
105690264
Ribosome biogenesis [BR:
aroa03009
]
Eukaryotic type
Pre-60S particles
Helicases
105690264
Transfer RNA biogenesis [BR:
aroa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105690264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105690264
NCBI-ProteinID:
XP_020710480
LinkDB
All DBs
Position
4:2693471..2698186
Genome browser
AA seq
1023 aa
AA seq
DB search
MMADFSDDLFQVFEENNEDVVQPPNETDPATELSGIEKIKNEDSKEPNIKRGLEEDDEPI
GKRQRIDSLTEDLNLEELSRRITVHTIQTIESCTHEVAVPPGHEYVPLERKDEPLAKEYK
FLLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQ
KYREFFEEFKDVGLVTGDVTINPTASILIMTTEILRNMLYRGSEVMREVGWVIFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVAHLHHQPCHVVYTDYRPTPLQ
HYIFPAGGDGIHLVVDENGEFKEENFNRAMAYLQQSGDAAKGDQKGRKGGVASKAAAQTN
IFKIVKMIMERNFAPVIIFSFSKKDCETYAMQMAKLDFNTVDEKRLVDEVFNNAMDVLTE
EDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPA
RTVLFTAPRKFDGRDFRWITSGEYIQMSGRAGRRGLDEKGIVVLMIDEKVSPAVGRDIVQ
GKPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNRVKDLQQLYN
SIVVDKFVEVSSYHHIREQLDKLGSEFRQYLTKPEYLVPFLQPGRLIKVKNETEEFDWGI
IVNFKKKTPKNPMKEKTVIVIDILLHISSESPEGNPLPCKEGESGEMEVVPVLQSLISQI
SSLRVFYPKDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMHINEPGFKDIITKIET
LEERLFAHALHKDPELPELSERYLRKEETGEKLKQAKAELKRARSVLQMDELKCRKRVLR
RMAYCTAADVIELKGRVACELNGADELLMTEMIFNGLFNTLSVPQMVALISCFVCDEKGA
ELPKSTEELSGPLRQMQDMARRIAKVTADAKLEIDEEGYIGKFKPFMMDVVYAWCKGANF
LQICKMTDIFEGSIIRCLRRLEEVLRQLCQAAKNIGNSDLENKFSEGIKVIKRDIVFAAS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgattttagcgacgatctcttccaagtcttcgaagaaaataacgaggatgtt
gtacagccgccaaacgaaactgaccccgctacagaattgtcgggtatcgagaaaattaag
aacgaagactctaaggaaccaaatatcaaaagaggtctcgaagaggatgatgagcctatt
gggaaaaggcagagaatagactccctcactgaggatctgaatttggaagagctatctcgc
cgtataaccgtgcacacaattcaaacgatagagtcttgcacccacgaggtggcggtacca
ccaggacatgagtatgtgcccttggaaaggaaagacgaaccgctagcaaaggaatataag
tttcttctggatccattccaaaaagaagctatcttatgcattgaaaacaaccaatcagta
ctcgtctctgctcatacttctgctggaaagactgttgtagctgagtacgcaatagcctgc
tctctgagggataagcaacgagttatatacacaacccccataaaagctctgagtaatcaa
aagtacagagaattttttgaggaattcaaagatgttggacttgttacaggggatgttacc
ataaatcctacggccagcatactcatcatgacaacagaaattctgagaaatatgctttac
agaggatcggaggtcatgcgagaagttggttgggttatatttgacgaaatacattacatg
cgtgacaaagagagaggtgttgtgtgggaggaaactctaattcttcttcccgataacgtt
cactacgtatttttatcagcgacgattccaaatgctagacagtttgctgagtgggttgct
catttacaccatcaaccctgtcatgtagtttacaccgattatcgtccaacgcctctacaa
cattatatttttccagcaggtggtgatggaattcatttggttgttgacgaaaatggtgaa
tttaaggaagaaaatttcaacagggccatggcttacctacaacaaagtggcgatgctgct
aagggggatcagaaaggtcggaaaggtggagtagcctccaaggccgctgcccagactaac
atttttaaaattgtaaaaatgataatggagagaaacttcgcccctgtgataatattcagt
ttttccaagaaagactgtgaaacatatgccatgcagatggcaaagttagattttaacact
gtagacgaaaagcgattggttgacgaagttttcaacaacgcaatggacgtgttgaccgaa
gaagataggcgactaccccaagtagaaaacgtactgccattgctcagacgcggaatagga
attcaccatggtggcttactacctattcttaaggaaaccatcgagatattatttggtgaa
ggattgatcaaggctttatttgccacggaaacatttgctatggggcttaacatgccggca
agaacggtattgtttaccgcaccgagaaaattcgatggcagagattttcgctggatcacc
tcaggagaatatattcaaatgtcaggcagggccggtcgaagaggtcttgacgagaagggt
atcgtggttttaatgattgacgaaaaagttagcccagcggtcggcagagacattgtgcag
ggaaaacctgatccgataaattcagcgtttcacctgacttacaacatggtccttaatttg
ttgagggtggaggagataaatcctgaatacatgctggagaggagcttttaccaatttcag
aatcaagcgagcataccggacctgtacaatagggtcaaagatttgcaacaactctacaat
tcaatagtagttgataagtttgtcgaggtatcgtcatatcatcacatcagagaacaactg
gataagctcggtagcgagtttcggcaatacttgaccaaaccggaatatcttgtcccattt
ttacaacccggtagattgatcaaggttaaaaatgaaactgaagagtttgactgggggatc
atcgttaatttcaagaagaaaaccccgaaaaatccgatgaaagagaagaccgttattgtg
attgatattctgctccacatatccagcgaatcgccggagggaaatcctctcccgtgtaaa
gagggggagagcggggaaatggaagtggttcccgttttacaatcattaatttcacaaatc
agttcactgcgtgttttttatccaaaagacttgcgaccaagtgacaatagaaaaagcgta
ttaaaaaccatccaagaggtcaagaagcgtttcccagatggtccgcccctgttaaatcca
ataactgatatgcacatcaatgaacctggtttcaaagatataattacgaaaattgaaaca
ctcgaagagagattattcgcccatgcattgcacaaggatcctgaattaccggaattgtca
gaacggtatttacggaaagaggagaccggagaaaaactgaaacaggccaaagctgagctg
aaacgcgccagatccgtactgcaaatggacgagttgaaatgtaggaagcgtgttttgcgg
cgaatggcatattgcacagccgccgatgtgatagagttgaagggccgggtggcctgtgag
ttgaacggcgcggacgaacttttgatgaccgaaatgattttcaacgggttgttcaatacc
ttgagcgtaccgcagatggtcgctctgattagttgcttcgtttgcgacgaaaaaggtgcc
gaactgccaaagagtacagaggagcttagcggtcctctgaggcaaatgcaagacatggcg
aggcgtatagcaaaagttacagctgacgcgaaattggaaatcgacgaggaaggatacatc
gggaaattcaaaccatttatgatggatgttgtgtacgcgtggtgcaaaggcgccaatttc
ctccaaatttgcaaaatgaccgacatatttgaagggtccataataagatgtctacgtcgt
ttggaggaggttttgaggcagctctgccaggctgcaaaaaatatcggaaattcagattta
gaaaataagttcagcgaaggtataaaggtgataaaacgggatatcgttttcgccgcctcg
ctgtacttgtaa
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