Athalia rosae (coleseed sawfly): 105690501
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Entry
105690501 CDS
T09776
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105690501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105690501
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105690501
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
105690501
NCBI-ProteinID:
XP_012263718
LinkDB
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Position
1:14770152..14773098
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AA seq
515 aa
AA seq
DB search
MADESEDQWLYGDSVDGKEASTAVPELANTENDGASDTQEDPLPLSEQLPFTEEPPGESE
HAGPLDDEQSVPLEPEITPSELESNENGTKEVSGQEDGDAATDSDSDDDVHVVIGDIKST
PAYSSLNIKRGGLLGSATGVPDKLNKQPGKFSIDEFETIGVINGMPAHEFNLDQLEDKPW
RQPGADITDYFNYGFNEETWRAYCERQKRMRSESGVGLILNAGGGANNPGGGMRVPQVAI
TNDNSKYSGIMGPKRAGPPPGRKMAGTIDVIGSSGLASRRNLDKSPPKENVIQVMTADRR
EYSRKPGFPDMSVPPPGAGMPPPFDMPPPGYAGEPPPFYMPETDPYYQSYEPTQDSQWGN
DPTWQPTNLAIPLTESEEDKDAGPKTIPTMVPPISIPTLLPPREPREGRERDRDRDSVAR
DRDPVVRERDRERDRDRDRESAPRDRTRERDTESVAKEDERDRDRSRSQHRHKDSRHRHR
SRSRTRRHKSRSRSPTRRKKKSRRSERERSKEESE
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgagagtgaggatcagtggttatatggtgattcagttgacggaaaagaagct
tccactgctgttccggaattggcaaatacagaaaatgatggagcttccgacactcaagaa
gatccgttgcctttgtccgaacaattacctttcaccgaagaaccaccgggtgaatccgag
cacgcaggtcctttggacgacgagcagtcagtaccattggaaccagaaataacgcccagt
gagctagaaagcaatgagaatggcacgaaagaagtatcaggtcaagaagatggtgacgca
gccactgattctgactcagatgacgacgttcacgtcgttattggagatatcaaatccacc
cctgcatacagcagtttaaatatcaaaagaggtgggctgcttggatcagcaactggtgta
ccagataaactgaataagcagccaggaaaattcagcattgatgaatttgaaacaattgga
gttataaatggaatgccagcacatgaattcaacctagaccaactagaagataagccctgg
agacagccgggagctgatataacagattattttaactatggttttaatgaagaaacgtgg
agagcatactgtgaaagacaaaagcgaatgagaagtgaatctggtgttggattaatcttg
aacgctggtggtggagctaataatccagggggtggtatgcgagtacctcaagtagcaatt
actaatgataatagtaagtattcaggtatcatgggtccgaaaagagcgggtccaccccct
ggccgaaaaatggcagggactatagatgtaattggaagttctggcctggcttctagaaga
aatttagacaaatccccacccaaagaaaacgtgattcaagtaatgactgccgacagaaga
gaatactctaggaaaccggggttccccgatatgagcgtcccacctcctggagcaggaatg
ccacctccgtttgacatgcctccaccaggttatgctggggaaccaccgcccttttatatg
ccagaaacagatccctattatcagagctacgaacccacgcaggacagccaatggggaaac
gacccgacatggcagccaaccaatcttgcaattccattgacagaaagtgaggaagacaaa
gatgctggaccaaaaactatacctacaatggttccgccaatatcaattccaaccctactg
cctcccagagagcccagggaaggaagagaacgagatagggaccgcgattccgttgcacgt
gatagagatcctgtggtacgagaaagagatagagaacgtgatagagatagagatcgagag
tctgccccgagagatcggaccagagaaagagatacagaatctgtcgctaaagaagatgag
agggatagagataggtcgagatctcagcatcgtcacaaagacagcaggcacaggcaccgg
tcaagatcgcgtactcgccgacacaagtcaaggtcacgaagtcctaccaggcgtaagaag
aaatctcgtagatcagagcgggaacgttccaaggaagaaagtgaatag
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