Athalia rosae (coleseed sawfly): 105691592
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Entry
105691592 CDS
T09776
Name
(RefSeq) uncharacterized protein LOC105691592
KO
K15542
polyadenylation factor subunit 2
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105691592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105691592
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105691592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_RFWD3
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR41
Beta-prop_WDR11_2nd
WD_LRWD1
Beta-prop_SPT8
Beta-prop_ACSF4
WDR54
Motif
Other DBs
NCBI-GeneID:
105691592
NCBI-ProteinID:
XP_012265607
LinkDB
All DBs
Position
1:complement(32522485..32532067)
Genome browser
AA seq
1085 aa
AA seq
DB search
MSVNTQFANPPPAISLPNMSVPPPIATPNLSAPPPNLTTINTSGGYQHRFGNHRDASRGF
FKPFRPYHAPKVVAGGQDALQDEFDGKRLRKSVMRKTVDYNAAIIKTLENRVWQRDYRDR
RALQPDVIYYPDLLPPPSYVDNPINAVTTKFVKTATNKMRCPIFCMAWTPEGRRLVTGAS
SGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQSNMNNVKMFQ
AHKEAIRGLSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLV
ISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDVKWNENGNWLVTASRDHLLKLFDLRN
LSQEVQTFRGHKKEASSVAWHPSHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIVW
TLAWHPLGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGAAGVDDHEIADDSPVI
PGMGPEDRINADGETEDKTGGIPGLDLDHAVDEGKKYANKKVPYSKPIPRNFQAQWNEME
AEDIEQVEALNAFVNQLIETTPGAVPLNEVTPNAIILYGTMIPVEPESKLAEAITKGNDA
INKLVFSGEIEELREVIGSPEGVEDTEDFLQDEGEIDYSKVPEIELPAPLPSSKFAQNPE
LLKTLNRGGKRKFDQLIGWSDGGASDRTSKIHQPVFGASINDDLSSDADSRSGMGKSNSG
GDRDTYGVGLDEDFRRLPNDVRNMGRDEDLRFNNMGNMSGGPGRPGMGSDQDLRSKSMNF
GDTDFRQLPPHNFGMGKSSLDDPFGDRDREGRERSRWDDENGRNLNDNFNMDFPGNNNFD
KRDNSSSNMSGMGSNHNMSHIGSTHHNMQNLNPNMSHHLSNMSNIGPHSNIPPHLSMPNK
GNQNMPSHQSMQNMDNTMSHMNNPNMSTMLHHPNMPPGFGPNGGPPGNFGPNFRPPNGNF
GSNHNFRSNPMAPFAPNSGGPSYNSSFMSNQGPPNLRGPNAGNQGPPNFDRSGFSGPNFR
GSNPGNQGQSGYGGYNKNGAMHNMQGRSRSTNENNGGRGAYNSRGRGRDNDRGDRGGNSR
GRDNF
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcaatactcaatttgctaatccacctccggctataagcctccctaatatgtca
gttccacctccaattgcaacaccaaatttatcagcacctccgccaaatttaacaacgata
aatacctccggaggatatcagcataggtttggtaatcacagagatgcaagtcgaggattt
tttaagccatttcgaccctatcatgcaccaaaggtggtcgcgggtggtcaagatgcattg
caagatgaatttgatggcaaaagacttcggaaatctgtcatgcgaaagacagttgactac
aacgctgccatcatcaaaactctggagaatcgtgtctggcaacgagactacagagacaga
agagctttacaaccggatgttatatattatccggatcttctcccaccaccaagttacgtc
gataatccaattaatgcagtgacaaccaagtttgtcaagacagcaacgaataagatgcga
tgtccaattttttgtatggcctggacaccggagggaagaagacttgtcaccggtgcatct
agcggcgaattcacattgtggaatgggcttacttttaattttgagactatcttacaggcc
cacgatagtcctgttcgtacaatggtttggtctcacaacgaaagctggatggtgacgggt
gaccatgctggctacgtcaagtactggcagagcaacatgaacaacgtcaagatgtttcag
gcgcacaaagaggcgattagaggactcagtttcagtcctacggatcacaaactggccact
tgcagcgacgatggaaccgtccgaatctgggacttccttcgatgtcacgaggaacgaatt
ctcaggggacatggggctgacgtgaagtgtgtccattggcatccgcagaagagtctcgtt
atatctggaagtaaggacaaccaacagccagtgaaactctgggatccaaaaactggtcaa
tcccttgcaaccttgcatgcacataaatctacagtaatggatgttaaatggaatgagaat
ggaaactggctggtaacagcatctcgggaccatttgttaaagttattcgacttgagaaat
ctaagtcaagaagttcagacgtttcgcggtcacaaaaaagaagcttcaagtgttgcgtgg
catccaagtcatgaaggacttttctgcagtggtggaagtgacggggcaatactcttctgg
catgtcggagctgacaaggaagttggagcaatagagcaggcacacgacagtatagtgtgg
acgttagcatggcacccacttgggcatatattatgttctggaagtaacgatcacacgtca
aagttctggacgagaaatagacctggtgatttgatgagagacaagtacaacttgaatacg
ctgccagcaggcgccgcaggagttgatgatcatgaaattgctgacgactcaccagtgatt
cctggcatgggtcctgaagaccgaattaacgctgatggtgaaactgaagacaaaaccgga
ggtattccaggcctcgatttggaccatgctgtagacgaaggaaagaaatatgccaacaaa
aaggttccttacagtaaaccgattcccagaaactttcaagcacaatggaatgaaatggaa
gcagaagatatagagcaagttgaagcactaaatgcctttgtcaatcagctgattgaaaca
acgcctggagccgtgcctttgaatgaagtaacacccaatgccataattttgtatgggaca
atgattccggttgagcctgaatcgaaattagctgaggccatcacgaaaggaaacgatgca
ataaacaaattggtcttttctggagagatagaagaacttcgtgaagtgattggatctcct
gaaggcgtcgaagacactgaagactttttgcaggatgaaggtgaaatcgactattcaaaa
gttcctgaaattgaacttcccgcaccattgcccagttctaagttcgcccaaaatccagaa
ctattaaaaacattgaaccgtggtggtaaaaggaagtttgatcagttaattggttggagt
gatggcggtgctagcgacagaacatcaaaaatacatcaacctgtgtttggtgcttcgatc
aatgatgacttgtctagtgacgcagattcgaggtctggaatggggaaatctaattcaggt
ggggacagggacacttatggagttggtttagatgaggattttagaagattgccaaatgat
gtgcgaaatatgggtagagatgaagatttgcggttcaacaatatgggaaatatgtctgga
gggccaggtaggccaggtatgggtagcgatcaagatctaaggagtaagtcaatgaacttt
ggtgatacagatttccgacaattgcccccgcataattttgggatgggtaaatcaagcctt
gacgatccctttggagatagagatagagaaggcagagaaagatcaagatgggatgatgag
aatggtagaaacctaaatgataattttaatatggatttcccaggtaataacaactttgat
aaacgagataattcgtcgtcgaacatgtcaggcatgggaagtaatcacaatatgtcccat
atcggatccacccaccataacatgcaaaacctaaatcccaatatgagccatcacttgtca
aatatgtcaaatataggtcctcattcgaacataccgccacatctgagtatgccaaataag
ggtaatcaaaatatgccctcgcaccagagtatgcaaaatatggataacaccatgtcacat
atgaataatccgaatatgtccactatgctgcatcaccctaacatgcctcctggatttggg
ccaaatggagggccacctggtaattttggacctaatttcagacctcccaatggtaacttc
ggatctaatcataacttcagatcaaaccccatggctccttttgctccaaattctggtgga
ccatcttacaacagctcgtttatgtcgaatcaagggccaccaaacctgcgaggtcctaac
gctggaaatcaaggcccaccaaattttgatcgttcaggttttagtggtccaaattttcgt
ggatctaatcccggaaatcagggacagtctggttatggtggatataacaaaaatggggct
atgcataacatgcaaggaagatccaggagtactaatgaaaataatggtggaagaggtgct
tataatagtagaggcagaggtagagacaatgatcggggtgaccgaggtggcaattctagg
ggtagagataatttttga
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integrated database retrieval system
