Athalia rosae (coleseed sawfly): 105691861
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Entry
105691861 CDS
T09776
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03018
RNA degradation
aroa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105691861
09123 Folding, sorting and degradation
03018 RNA degradation
105691861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105691861
03041 Spliceosome [BR:
aroa03041
]
105691861
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105691861
mRNA degradation factors
5'-3' decay
Lsm complex
105691861
Spliceosome [BR:
aroa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105691861
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
105691861
NCBI-ProteinID:
XP_012266051
LinkDB
All DBs
Position
3
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AA seq
91 aa
AA seq
DB search
MTSSVTTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLDDVTESEAT
PEGRRVTKLDQILLNGNNITMLVPGGDMPDT
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttcagtgactacaaatccctcgacgttattaccccttgagttggttgacaaa
tgtatcggttcaaggatacacattataatgaaaaatgataaagaaatcgttggaacttta
ctaggttttgatgattttgttaatatgctacttgatgatgtaacggaaagtgaagctaca
cctgagggacgtagagtgacaaaattggaccaaatccttcttaatggcaacaatattaca
atgttagttcccggtggagatatgccagatacataa
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