Athalia rosae (coleseed sawfly): 105691893
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Entry
105691893 CDS
T09776
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105691893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105691893
03041 Spliceosome [BR:
aroa03041
]
105691893
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105691893
Spliceosome [BR:
aroa03041
]
Complex B
Other components
Prp19-related factors
105691893
Complex C
105691893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_15
TPR_12
ARM_TT21_C
Mad3_BUB1_I
RPN7
DHR-2_Lobe_A
PPR
TPR_10
Terminase_6C
AcetylCoA_hyd_C
Motif
Other DBs
NCBI-GeneID:
105691893
NCBI-ProteinID:
XP_012266120
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All DBs
Position
3:complement(14693151..14696972)
Genome browser
AA seq
862 aa
AA seq
DB search
MLQREDSEGNPYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSANLNIVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTDQ
LFITRTRQVFDRSLRALPITQHHRIWPLYIGFLKKHNVYETAVRVFRRYLKLAPEDAEEY
IEYLISTGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYAQFE
ELSLSKRMEDAAKNPNPTEEDDIELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHK
RVMLYEGQPHEIINTYTEAVQTVLPQQAVGKLHTLWVAFAKFYEENGQIADARVVFEKAT
HVPYTKVDDLASVWCEWAEMEIRHDNCKEALKLMHRATAMPSRKVAYHDETETVQMRLYK
SLKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYE
KGIALFKWPNVYDIWNTYLTKFLNRYGGTKLERTRDLFEQCLEHCPPRYAKALYLLYAKL
EEEHGLARHAMSVYERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLSEE
NTREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQVWKEFEVRHGNEDTMRE
MLRIKRSVQAMYNTQVNMMSAQMLNSAANLASDEPVASLNDAMKSLDNKTSSTSADITAQ
SGFKDNINFVRGVTEGNGRAEPQVNNPDEIDIDMDDDSEDEKEVEEDVPVEKQAIPSKVF
GSLKNARVEEDEDEGQEKNADN
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagcgggaagattctgagggaaatccctatgtgtttaacgaagaagatttacct
tatgaggaggaaatcttgcgcaacccttactctgtgaaacattggcagcgatatattgat
catttgaaaagcactaagagcgcaaatctaaatatcgtttatgaaagagcgctgaaggaa
ctaccggggagctacaaactttggtacaattacctccgacagcgtgtgagtcagctgaaa
ggacgttgcataactgatcctctctacgaggatgtcaacaatgcatttgaacgtgccctt
gtcttcatgcataaaatgcctcgaatatggatggattattgcacgctcatgacggatcaa
ttgttcattactcgaactcgtcaggtcttcgatcgttcgcttagagcccttcccataact
cagcaccatcgtatctggcctctttatataggcttccttaagaaacacaacgtttatgag
acggccgttcgagtcttcagaagatacttgaagttagctcctgaggatgccgaggagtac
atagaatacttaatatctactggaaggttagacgaggctgcagtaaaacttgctcaaatt
gtaaaccaagacgactttgtttcgaaacatggaaaatccaaccatcagctgtggaatgaa
ctttgcgatctcatatcgaaaaatccttcaaaaataaagtcattgaatgtcgatgctatc
attaggggtggtttgagacgttacacggatcagttgggtccactctggaattctttggct
gactattacgttcgtagtggtctgttcgaaagggccagagatatctacgaagaagctatt
cagactgtgtccaccgtcagagatttcactcaagtgttcgatgcctatgcgcaatttgaa
gagctcagcctcagcaaacggatggaagatgctgcgaagaatcctaatccaacggaagaa
gatgatattgaattggaacttagattggccaggtttgaacacctgatggagcggagattg
ctgctactaaacagtgtcctgctcaggcaaaatccgcacaatgttcaagagtggcacaaa
agagttatgctgtacgagggtcagccccacgagataatcaatacgtacaccgaagcagtt
caaacagttctgccccagcaggctgtgggaaagctacacactttgtgggtggcatttgcg
aaattctatgaggaaaatggtcagattgccgatgccagagtggtatttgaaaaagcgaca
cacgttccatacacaaaagttgacgatcttgcctcggtttggtgcgaatgggcggaaatg
gagatcagacacgacaattgcaaagaggctttaaaactgatgcatcgtgcaacggctatg
ccgtcgcggaaagttgcgtatcacgatgagactgaaactgttcagatgagattatacaag
tcgctcaaagtctggtcgatgtacgctgatcttgaagagagctttggtacttttaagacg
tgcaaggcagtttacgataaaataattgatctgaagattgcaacgccacagatcattatc
aattatgggctatttctcgaggagaacaattattttgaagaggcctttcgggcatatgaa
aaaggcatcgctctattcaagtggccaaacgtttacgatatatggaatacctacttgact
aaattcctaaatagatatggaggtaccaagcttgagaggactcgagatcttttcgaacaa
tgtttggaacattgtccgccaagatatgcgaaagccttgtatttactctatgccaagtta
gaagaagagcacggtttggctaggcatgcgatgtcagtttatgagcgagcaacgaatgca
gttttacccgaggaaaaattcgagatgttcaatatctacatcaagaaggctgccgatata
tacggagtgcccaaaactcgtcaaatttatgaaaaagcgatcgaagtactcagtgaagaa
aacactagggaaatgtgcctaagatttgccgaaatggaaaccaagcttggcgaagtcgat
cgggctagagcgatttacgctcactgtagtcaaatttgcgatccaagggtaacttctaat
ttttggcaagtgtggaaagagtttgaggttcgccatggtaatgaagatacaatgagggaa
atgctgagaatcaagcgtagcgtccaagcaatgtataacactcaagtgaatatgatgtca
gcgcaaatgctaaatagtgcggcaaatcttgctagcgatgagcctgtcgctagtttgaat
gatgccatgaaaagtcttgacaataaaacatcttctacaagcgctgatatcacagcgcag
tctggattcaaagacaacattaattttgtcagaggagttacggaaggaaacggtagagca
gaacctcaagtgaataaccctgatgaaatagacattgacatggacgatgatagcgaagat
gagaaagaagttgaagaagatgtacctgttgaaaaacaagctattccatcaaaagtattt
ggaagtctgaagaacgctagagtagaggaagatgaagacgagggtcaagagaaaaatgct
gacaactga
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