Athalia rosae (coleseed sawfly): 105693208
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Entry
105693208 CDS
T09776
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105693208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aroa03021
]
105693208
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105693208
Transcription machinery [BR:
aroa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105693208
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105693208
U7-dependent histone pre-mRNA processing factors
105693208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
105693208
NCBI-ProteinID:
XP_012268406
LinkDB
All DBs
Position
6:complement(17708051..17710209)
Genome browser
AA seq
683 aa
AA seq
DB search
MSSKRKSDTQVPAEESNLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL
PFVDLVEADEIDLLLISHFHLDHSGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV
SNIATEQMLYTESDLEASMDKIETINFHEEKDVFGVKFWAYNAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPNIHPDVLVTESTYGTHIHEKREDREGRFTNLVHEIVNRG
GRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYINAMNDKI
RRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDSKNGVI
IAGYCVEGTLAKTILSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPH
VVLVHGEQNEMGRLKAALQREYEDDPHTSMEIHNPRNTVAVELYFRGEKTAKVMGTLAME
APKPGQKLSGVLVKRNFNYHILAPCDLSKYTDMSMSQVIQRQSIHFSASIPVLKYLLTQI
AGSLETIDDKKMRVFNNVDVLLEGKTVTMEWIATPVNDMYADSVLTAILQAEMMDQPPKT
LQAPAKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLMNLVVTSEE
DETFEQIVQTAVSKLHQSLAPPP
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaaaacgaaagtcggacacgcaagtgccggcagaagaaagcaacttgctgtcg
attagaccacttggcgcgggtcaagaggtcggcagatcatgtattatgctggaattcaaa
ggaaaaaagattatgctggattgtggcatacatccaggtctctctggcatggatgctcta
ccgttcgttgatcttgtagaagctgatgagattgacttacttttgatatcccactttcat
ctcgatcacagcggagctttaccatggtttttgcagaagacaagctttaaaggacgatgt
tttatgactcatgcaacaaaagctatatatcgctggctgttgtctgactacataaaagtt
agcaacatagcgacggagcaaatgttatatacagagtcggacttggaggccagcatggac
aagatagaaaccataaatttccacgaggagaaggatgtgttcggagtaaaattctgggcc
tacaatgcaggacatgttctcggagccgcaatgttcatgatcgaaattgctggtgttaag
attctgtataccggtgactttagtcggcaagaagatcgacatttaatggctgctgaaata
cccaatatacatccagatgttctagttacagaatcgacgtatggaactcacattcatgag
aaacgagaggaccgagaaggcaggttcaccaatctggttcatgaaattgtaaaccgaggt
ggcagatgcttgattcctgtattcgcgctcggtcgtgcacaggaattacttttaatcctt
gatgaatactggagtcaacatcccgagttacatgaaatcccaatctattatgcctcatct
ttggcaaaaaaatgcatggccgtctaccagacgtacatcaatgccatgaatgacaagata
cgtcgacaaatagcgatcaacaatccatttgttttcaaacatatatcaaacttgaaggga
atagaccattttgaggatataggtccttgcgtagtaatggcatctcctggtatgatgcag
agtggtttatctagagaattgtttgagtcctggtgtacagactcaaagaacggagtgata
attgctggttactgtgtcgaaggtaccctggccaaaacaatattatcagaaccagaagag
atagctacaatgtctgggcagaagctaccactcaaaatgtcagtcgattatatatcattc
tctgcacataccgactatcagcaaacttcggaattcataagaattttgaaaccacctcat
gtcgttctcgttcacggcgaacaaaatgaaatgggaagactaaaagctgctctgcaaaga
gaatacgaagacgatccgcatacaagtatggaaattcataatcctagaaacactgtggct
gtagagctatatttccgtggtgaaaaaaccgccaaagtgatgggaacattagctatggaa
gctcccaagcctggacaaaaattgtcaggcgttttagtgaaacgaaatttcaattaccat
attttagcaccgtgcgatttatccaaatatacggatatgagcatgagccaagtgattcaa
aggcaaagtatccatttttcagcatcaatacctgtcttgaaatatctgctcactcaaatt
gctggcagtctagagactattgatgataaaaagatgagagtcttcaataacgttgatgtt
ttactagaaggaaaaaccgtcacaatggaatggatagcgacccctgttaatgacatgtac
gcagattcagttctcactgcgattctacaggctgaaatgatggatcaaccaccaaaaact
ctgcaagcacctgccaaaatggacaggatgcattttaaggaatgtcttatcgagatgcta
caagaaatgttcggtgaagattcagtaccaaagatattcaaaggtgagaaattgtatgtt
actgtggatggtaagaaggctcacatcgatttgatgaacttggtcgtgacgagtgaagag
gatgaaacttttgaacaaatagtgcagactgctgtttctaaactacatcaatcgctcgcc
cctcccccatga
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