Athalia rosae (coleseed sawfly): 105693367
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Entry
105693367 CDS
T09776
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03013
Nucleocytoplasmic transport
aroa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105693367
03015 mRNA surveillance pathway
105693367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105693367
Enzymes [BR:
aroa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105693367
5.6.2.5 RNA 5'-3' helicase
105693367
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105693367
mRNA cycle factors
Common to processing body (P body) and stress granule
105693367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
NPHP3_N
ATPase
nSTAND3
AAA_22
SRP54
AAA_16
nSTAND_NTPase5
AAA
AAA_7
AAA_10
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
105693367
NCBI-ProteinID:
XP_012268639
LinkDB
All DBs
Position
1:complement(424383..430622)
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AA seq
1118 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDGGQSQPIQ
VNGTSGGGSSSLDLKIAGATQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVMC
NACRKWFCNGRGNTCGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRSFLAWLVKIPADQEQLRARQM
SAQQMNKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSGI
GHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQLALRKFAVDDSSV
SGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTG
KTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTDKIHKSNLKVVRLCAKSREAIDSPVS
FLALHNQIKNMETNNELQKLQQLKDETGELSSVDEKRYRLLKKTAEKELLEAADVICCTC
VGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKIDF
PWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLYSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKPK
KLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRTH
DTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGATSAKN
KTGPRGSKLSQTEQNTQPYSQPGIPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVGE
FQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcatacgggcctagtagccaaaccctgactttcctcgacacggaggaa
gcagacttgataggggccgatacgcaagggagcgaatttgatttcaccgacttcacttta
ccatccccaagtcagacccaggcttcgcagcatgacggaggacagagtcaacccattcag
gtgaatggcactagtggcggtggtagttcttcacttgacttgaaaatagcaggcgctaca
cagagtcttgccgaactacaattcgaagaggaagaggaggaagcttactataatcgagat
ttacctgaacatgcgtgtaaatattgcgggatccatgaagcatcttgtgtggtcatgtgc
aatgcatgccgcaaatggttctgcaatggtagaggtaatacttgtggctcgcatatcatc
aatcacttagtgcgtgctaaacataaggaggtcacattgcatagggatggcccacttggt
gagacagttctagagtgctattcctgtggtgtaagaaatgtgtttgtcttgggattcatt
cctgccaaggctgattctgtcgttgttctgctttgccgacaaccctgtgctgctcaaagc
tctctcaaagatatgaactgggatcaagagcaatggaaaccactcattgcggatcgcagc
tttttggcttggttggttaaaatcccagctgaccaggaacaactaagagctaggcaaatg
tctgcacaacaaatgaataagctggaagaattatggcgagacaatgttgatgcgactttc
caagacttggaaaaaccaggggttgacgaagagccgcaacaagtcctcttgcggtacgag
gacggatatcaatatcaaaatatatttggccctctagtgaaattggaagctgactatgat
aaacgtctcaaagaatcacagacccaagaaaatattgaggtacgttgggatgttggttta
aacaaaaagacaatcgcatactttatgcttgcaaagacggacggcgatatgaaactaatg
catggagatgaattgagattacggtatttaggagaactgcacaaaccttggtctggaatt
ggccatgttattaaaattcccgacaattatggagaggaagttggcattgaactgaaaaat
aactctggggctcctaccgaatgcatcagcaacttcgtggtagacttcatctggaaaagc
actagttttgatcgtatgcagctcgctctacgcaaattcgccgttgatgactcctctgta
tctggatacatatatcacagactactcggccatgaagtggaagaagtactgtttcgctgc
catctccctaaacacttcagtgctccaaatctacctgacctcaatcggtctcaggtctat
gctgtaaaacatgctgtgcagagaccattgtctctcattcaaggacctccgggaacgggt
aaaactgtaactagtgcaacaatagtttaccagctagtgaaacagaatggaggcccagtc
ttggtctgtgccccttctaataccgcagtcgatcaactgaccgacaagattcacaagtct
aacttgaaggtcgtccgcttgtgcgcaaagtcaagagaggccattgactccccagttagt
ttccttgctctacacaaccagataaaaaatatggagacaaataacgaactgcaaaagttg
caacaactcaaagatgaaactggagaactatctagtgtagatgagaaacgatatcgactt
ctgaaaaagactgcggaaaaagaactgttagaagccgcggatgttatttgctgcacctgt
gtcggagctggagatccaagattacatagattgaaattccactcgatcttgatcgatgaa
agtatgcaagctacagaacctgaatgtatggtaccagttgttttgggtgccaaacagtta
attctagtcggtgatcattgccagcttgggccagtagtcatgtgcaaaaaagcagctaga
gctggtttgtctcaatctttattcgagagactcgtcgtactgggaattcgtcctttccgt
ttagaagttcagtaccgtatgcatccggatctatcacgcttcccatccaacttcttctac
gaaggttcattgcaaaacggcgtctgtgcggatgaaagaaagttattgaaaattgatttt
ccatggcctgctccggataaacccatgtttttttacgtaacccaaggacaagaagaaatt
gctggcagcggtacctcttaccttaatcggaccgaagcttcgaatgtggaaaaaataaca
accaggttcttacgctgtggtgtgaaacctgaacagattggagttataactccttatgaa
ggccagagggcatatcttgtccagtacatgcaataccaaggttctttgtactctaagctc
tatcaagagattgaagttgccagtgttgatgccttccaagggcgtgaaaaagacatcatc
ataatgtcctgcgttcgatccaatgaacatcaaggaattggatttctaaatgatcctaga
agattaaacgttgcccttacccgtgctaaatatggaattatcattgttggaaatccgaaa
gttttatccaagcaacctctgtggaaccacttattgagtttttacaaagagcaaaaagta
ctcgtcgaaggaccgctaaacaatctgaaagaatctatgattcaatttgccaaacctaag
aaacttgtaaatgctgccaatccaggttctcacttcatgtctacatctatgtacgacgca
agagaggctctgatccctgggtcggtctacgatcgttcaggtacccaagtgaatggtacc
caaaatcataatccctactatcagagaaacgttccactggatatcttcagtaggactcac
gatacaatcagctacattagccctgagagagcacaagcggcgatgaataatgtcccagtt
cctgtaggtatgttcatgaacatggctcatgttccaccacgattttacaatcaacatcaa
caagctctgcaagcgagacaaaatcaaagaaatcgtagaggtgccacatcagctaaaaac
aagacaggccctcgtggaagtaaattgagccaaacagaacaaaatacgcagccgtatagc
cagccaggaattccgttaactcaaggaactacgcaaggaatgtcacaaccaggtttcagc
ctgtcgcagccgggtcttagtcaggcggagttgtcacaagactcgtttgctgttggcgag
tttcaatcgcaaatggatggtttgttgtcccaggattccacttatcaaggagatagaagt
ggattttaccaatcaggccagtcacaagccgggggccagttctctcagccgtactga
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integrated database retrieval system
