Athalia rosae (coleseed sawfly): 105693819
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Entry
105693819 CDS
T09776
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105693819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aroa03041
]
105693819
Enzymes [BR:
aroa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105693819
Spliceosome [BR:
aroa03041
]
Complex C
Other components
Step II factors
105693819
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
AAA_22
DEAD
GIPC1_GH2
AAA_19
nSTAND3
AAA_30
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
105693819
NCBI-ProteinID:
XP_012269428
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All DBs
Position
4:17017467..17022091
Genome browser
AA seq
1220 aa
AA seq
DB search
MDTDEVAKLEHLSLVSKICTELENHLGLNDKDLAEFIVDLAEKNNSLETFKKVLIENGAE
FSDSFMANLLRIIQHMKPSRQSSNKSLSNHNRQDDLSIKFPGLAIPNEYYKLQPIKEEKD
EDIVDDAMAALEALAPSGSKTSPTSRKEERPIIENNKDKKDKDKERKRNRSRDRKRERST
SHNRRERDRRHRSKSRERLRSRDRNRDRKRQRSRDRKRSRSRDARSRSRTKRSRSRDRKD
SKRGKRQDSERSRSRSMEELSVDPEVGKIYTGKVANIVQFGCFVQLEGLKRRWEGLVHIS
QLRREGRVASASDIVSRGQKVLVKVLSVAAQKVSLSMKDVDQDTGRDLNPVVSIAKADED
EKHLRNPDRPTSLLELQGHLDEDETYSRKRVQRLSSPEKWEIKQMMSAACIDRSELPEFD
IETGILPREDDEEEDVEIELVEEEPPFLHGHGRALGDLSPVRIVKNPDGSLAQAAMMQSA
LAKERREQKMLQREQEMDSIPAGLNKNWIDPLPDAESRTLAANMRGIGLQTQDLPEWKKH
VIGGKKSSFGKKTNLTLLEQRQSLPIYKLRDELVKAVTDNQILIVIGETGSGKTTQITQY
LAEAGFTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETSIKYM
TDGMLLRECLMDLDLKMYSVIMLDEAHERTIHTDVLFGLLKQAVGRRPDLKLIVTSATLD
AVKFSQYFFEAPIFTIPGRTFPVEVMYTKEPETDYLDAALITVMQIHLREPPGDVLLFLT
GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNI
AETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLIVTPISQAAAKQRAGRAGRTGPGKCYR
LYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALESL
HSLSALDNEGLLTRLGRRMAEFPLEPNLSKMLIMSVHLQCSDEILTIVSMLSVQNVFYRP
KDKQALADQKKAKFNQAEGDHLTLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQ
LLGIMDRHKLDVVSAAKNTVRVQKTVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSAL
FNRQPEWVIYHELVQTTKEYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPL
YNKYEEPNAWRISRVRRRRN
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggatacggacgaagttgcgaagttggagcatctgtctcttgtgtcaaaaatatgcacg
gaattagaaaaccatttaggtttaaatgacaaggatttagctgagttcatagtcgatttg
gcggagaagaataacagtttagaaactttcaaaaaagtgttaatcgaaaatggagcagag
ttctcggattcctttatggcaaacctgctacgaataatacaacacatgaaaccgtcacga
cagtcaagtaacaaatctctgagtaatcataataggcaggatgacttgtcaatcaagttc
ccagggctagcgataccaaatgaatattacaaactgcagccaatcaaggaggaaaaggat
gaagatattgttgacgacgccatggctgcccttgaagctcttgcaccgtcaggttccaaa
accagccctacctcgaggaaggaagaaagacccatcattgagaataataaggataagaaa
gacaaagataaagaaagaaaaagaaatagatccagagatcgcaaaagagaacgatcaaca
tcccacaatcgaagggaaagagacagaaggcataggtcaaaatcaagggaacgattgaga
tccagagatagaaatcgtgacagaaaacgacagagatctagagatcgaaagagatctaga
tccagagatgcccgttctaggtctaggacaaagcgatccagatctcgcgatcgtaaagat
tctaaacgtggtaaacgacaggattctgaacgctccagatctcggtccatggaagagtta
tcagttgatccagaagtgggaaaaatttacactggaaaagtagctaacattgttcagttt
ggatgttttgtacaattagagggtttgaaacgaaggtgggaggggttagttcacatttca
cagctcaggagagaggggcgcgtcgctagtgcaagtgacattgtctccaggggtcagaaa
gtcttggtcaaagtcttgagtgttgccgcccaaaaggtttctctgagtatgaaagatgtc
gaccaagatactggacgagacctgaatcctgttgtaagtatagctaaggccgacgaagac
gagaaacatttaagaaacccagatcggcctacatctttgctggaactccaaggacattta
gatgaggacgaaacatattctaggaaacgagtacagagattatcttcgcctgagaaatgg
gagataaagcaaatgatgtcagcagcctgtattgataggagcgagcttcctgaatttgac
attgaaactggaattctacctcgtgaggacgatgaagaagaggacgttgagattgagttg
gtggaggaagaaccaccatttttacatgggcatggtagagctctaggtgatttgagtcca
gttagaatcgtaaaaaatccagacggttcgcttgcacaagcagctatgatgcaaagcgca
ttggcaaaagaaaggcgagagcaaaaaatgcttcagagagaacaagaaatggactctatt
cctgcgggactcaacaaaaattggatagatcctttacccgatgcggagagtcgaacattg
gccgcgaatatgcgtggtataggattacaaacccaggatcttcctgagtggaaaaaacac
gtaattggtggcaaaaaatcatcatttggtaaaaaaacaaatctaactttgttggagcag
cgacagagtttgcctatttacaaactaagagacgagcttgttaaggcagtaacagacaat
caaattttgattgtaatcggagaaactggctctgggaaaactacgcaaattactcagtat
ctggcggaagccggttttacaactcgcggaaaaattggttgcacccaaccaagaagagtc
gctgctatgtctgtagccaaaagggtcgccgaagaatttggttgtaggctaggacaagaa
gttggatacacaatacgttttgaagactgtactagccccgaaaccagtataaagtacatg
acagacggtatgttgctacgagagtgtctcatggatcttgatttgaaaatgtattccgtt
attatgttggacgaggcccacgagcggaccattcatacagatgtgctatttggtttatta
aaacaggccgtaggccgtcgtccagatttaaagctaatagttactagtgctactcttgac
gctgttaagttctcacaatattttttcgaggcaccaattttcaccattcctggtcgtaca
ttccctgttgaggtgatgtacacgaaggaaccagagactgattatttagatgctgcgttg
ataacggtgatgcagattcatctgcgtgaaccaccgggggatgttctattatttttaact
ggacaggaagagatcgataccgcttgtgaaattttatacgaaaggatgaagtctttgggt
ccagacgtacctgaattgataattttacccgtttattccgcgctgccttccgaaatgcaa
acgagaatatttgaacctgctccacctgggtcacgaaaagtggttatagcaactaatatt
gctgaaacaagcctaacaatcgatggtatatactacgtcgttgacccaggatttgttaaa
cagaaagtttataattctaaaactggaatggacagccttatcgttacaccgattagtcaa
gccgctgctaaacagagagctggcagagctggtcgaactggacctgggaaatgctacaga
ttgtacacagaaagggcttatagggatgaaatgttgccgactccggtacccgaaatccaa
cgtaccaatttagctacgacagtattacaactgaagacaatggggataaatgatttgttg
cacttcgatttcatggatgcaccacctgtcgaatctctgatcatggcattggagtctttg
catagtttaagcgctctagacaacgaagggctcctaacaagactaggaagacgtatggcc
gaatttccattggagccaaatttgtcaaagatgttgatcatgagcgtccatttgcagtgt
tcagacgaaatattgaccatcgtgagcatgctctctgtacaaaatgtcttttacagacca
aaagacaagcaggcacttgcagatcagaaaaaagcgaaattcaaccaagcggaaggagat
catttaacgttattagctgtctacaattcttggcgaaataataaattcagtaatgcttgg
tgttatgaaaactttgtgcaaataagaacactgaaaagagcccaagacgtccgcaaacag
ctgttgggtataatggacagacacaaactcgatgtggtatccgctgccaaaaatacagtc
agagtacaaaagaccgtctgttcaggattctttagaaatgcggctaaaaaggatcctcaa
gaaggctaccgaactctggtggatagtcaagtggtctacattcacccgagcagtgcattg
ttcaataggcaacctgaatgggtaatttatcacgagttagtccagaccaccaaagaatac
atgcgagaagtgacgacaattgatcccaaatggctggttgaatttgccccagcatttttc
aagttcagtgatcccacaaaattgagcaagtttaagaagaatcaacgattagaaccactc
tataataaatacgaagaaccaaacgcctggcgtatatccagagttcgacggcgcagaaat
taa
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