KEGG   Athalia rosae (coleseed sawfly): 125500050
Entry
125500050         CDS       T09776                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
aroa  Athalia rosae (coleseed sawfly)
Pathway
aroa03013  Nucleocytoplasmic transport
aroa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aroa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125500050
  09122 Translation
   03013 Nucleocytoplasmic transport
    125500050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aroa03019]
    125500050
   03041 Spliceosome [BR:aroa03041]
    125500050
Messenger RNA biogenesis [BR:aroa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     125500050
Spliceosome [BR:aroa03041]
 Complex C
  Other components
   EJC/TREX
    125500050
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    125500050
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_WDHD1_1st EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_HPS5 Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Tricorn_2nd eIF2A RMC1_N WD40_MABP1-WDR62_1st NBCH_WD40 DSE1_N Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th WD40_RFWD3 PAC11 Beta-prop_TEP1_C Beta-prop_ELP1_1st TRM82_WD B-prop_COPA_B_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st PD40 Peptidase_S9_N Beta-prop_Nup120_160 PROPPIN Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 125500050
NCBI-ProteinID: XP_048507181
LinkDB
Position
2
AA seq 322 aa
MAGFNSRVEELTSYFKSHNKIKEQQSHSAKVHSVGWSCDGKLLASGSFDKCVCIFSLGTD
RLKPETTFRGHGGSVDQLCWHSFHPELLSTASGDKTVRIWDTRSQKCTANIATRGENINI
SWSPDGNTIAVGNKEDLVTFIDARVMKIRAEEQFNFEVNEISWNKDSDTFYLTNGQGCVH
ILSYPDLELLHVIKAHPGTCICIEFDPTGRYFATGSADALVSLWDADELCCLRTFSRLEW
PVRTISFSHDGQLLAAASEDLVIDIGEVQTGEKVADIPVEAATFTVAWHPKQYLLAYACD
DKDTYDRKRDAGSLKVFGFSSE
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcggggttcaacagccgcgtcgaagagttgacgagttatttcaagtctcataataaa
ataaaagagcaacaaagtcattctgcaaaagtgcatagcgtgggctggagttgtgatgga
aaattattagcttctggttcatttgacaagtgtgtctgtatattttctctgggaaccgac
cgtttgaaacctgaaaccacttttcgcgggcatggcgggagtgtcgatcagctatgctgg
cattcttttcacccggagctgctatcaaccgcaagtggagacaaaactgtacgcatatgg
gatacaaggtcccaaaaatgtacagcaaacattgcaacaagaggagaaaatataaatata
tcttggtcgccagacggcaatacgatagcagtaggcaacaaggaggatttggttacattc
atcgatgctagagtcatgaaaatccgagctgaagaacaattcaatttcgaagtcaatgaa
atttcatggaacaaagattcagacacattttacctaaccaatggccaaggatgtgtgcat
atactgagctatccagacttagagttactgcatgtgatcaaagctcatccaggaacatgt
atttgcattgaatttgaccctaccggtcgttattttgcaactggatcagcagatgctctg
gtttcattatgggatgctgatgaattatgttgcttaaggacgttctcgcgtttagaatgg
cctgtcaggacaatatctttctctcatgatggacaattgctagctgcagcttccgaagat
ttagtcatagatataggagaggtacaaacaggagaaaaagttgcagatataccagttgaa
gctgccacattcacagttgcgtggcatccgaaacaatatttgttggcgtatgcttgtgac
gacaaagatacttatgatagaaagcgggatgctgggagcttgaaggtctttggattttca
agtgaataa

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