Amycolatopsis roodepoortensis: NQK81_03580
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Entry
NQK81_03580 CDS
T08507
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
aroo
Amycolatopsis roodepoortensis
Pathway
aroo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NQK81_03580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aroo03000
]
NQK81_03580
03400 DNA repair and recombination proteins [BR:
aroo03400
]
NQK81_03580
Enzymes [BR:
aroo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
NQK81_03580
Transcription factors [BR:
aroo03000
]
Prokaryotic type
Helix-turn-helix
AraC family
NQK81_03580
DNA repair and recombination proteins [BR:
aroo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NQK81_03580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
UUV32552
LinkDB
All DBs
Position
complement(721845..723308)
Genome browser
AA seq
487 aa
AA seq
DB search
MHEDFERCVRAVQSNDARFDGWFFTAVLTTRIYCRASCPVVPPKPENMTFYPSAAAAQEA
GFRACKRCRPDASPGSPQWNERADLVARAMRLIADGVVDTDGVRGLAARLGYSVRQVERH
VRAELGAGPLSLARAQRAQTARLLIETTGLSMIDVALAAGFGSVRTFNDTVREVFALSPT
ELRARVRTAPATAPGTLNLRLPYRKPLFPDNLFGHLVATGVPGVEEWRDGAYRRTLRLPH
GPAVVALKPEDGYIGCRLTLSDLRDLSTAISRCRRLLDLDADPVAVDEALAADPLLAPLV
AAAPGRRVPRTVDGDEFAVRAVLGQQVSTAAARTHAARLVLAHGAAIDDPDGGLTHVFPD
AAALADIDPESLAMPQSRKRTLLGLVAELNEGDLDLGAGSDWQRARERLHALPGFGPWTV
ESIAMRSLGDPDAFLPTDLGVKVAAKGLGLGPAAFAAHAERWRPWRAYAVQHLWATGDHP
INRLPAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgaggatttcgaacgctgtgtccgggcggtccagtcgaacgacgcccggttcgac
ggctggttcttcaccgcggtcctgacgacgcggatctactgccgggcgagctgcccggtc
gtcccgcccaaaccggagaacatgacgttctacccgagcgcggcggccgcgcaggaggcc
gggttccgggcgtgcaagcgctgccgtccggacgcgagcccgggttcgccgcagtggaac
gagcgcgcggacctggtggccagggcgatgcggctgatcgccgacggcgtcgtcgacacc
gacggcgtgcgcgggctggccgcccggctgggctacagcgtccggcaggtggagcgccat
gtgcgcgccgaactcggcgcgggcccgctcagcctcgcccgcgcccagcgggcgcagacg
gcgcggctgctgatcgagacgaccgggctgtcgatgatcgacgtcgccctcgccgcgggg
ttcggcagcgtccggaccttcaacgacaccgtccgcgaggtcttcgcgctgtccccgacg
gaactgcgggctcgggtccggaccgcgcccgccaccgcgcccgggacgctgaacctgcgc
ctgccgtaccggaagccgttgttcccggacaacctgttcgggcatctcgtcgcgacaggc
gttcccggtgtcgaggaatggcgcgacggcgcgtatcgccgcaccctgcggctcccgcac
ggccccgccgtcgtcgccctcaagccggaggacggctacatcggctgccggctcaccctg
tcggacctgcgggacctctcgaccgcgatcagtcgttgccgtcgcctgctcgacctcgac
gccgatccggtcgcggtcgacgaagcgctggcggcggacccgctgctcgcgcccctcgtg
gccgccgcgccgggcagacgggtgccgaggacggtcgacggcgacgaattcgccgtacgc
gcggtcctgggccagcaggtgtccaccgccgcggcccgcacccacgccgccaggctggtc
ctcgcgcacggtgccgcgatcgacgaccccgacggcggcctgacgcacgtcttcccggac
gccgccgcgctcgcggacatcgacccggaaagcctcgcgatgccgcagagccgcaagcgg
accctgctcggcctcgtggccgaactgaacgaaggcgacctcgacctcggcgcgggaagc
gactggcagcgagcccgcgagcgactgcacgcgctgcccggcttcggcccgtggaccgtg
gagagcatcgcgatgcgctcgctcggtgacccggacgccttcctgccgaccgacctcggc
gtcaaggtcgccgcgaagggcctcgggctcggcccggccgcgttcgccgcgcacgccgaa
cgctggcgcccgtggcgcgcctacgccgtacaacacctctgggcgaccggagatcacccc
atcaaccggctgcccgccgcctga
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