Amycolatopsis roodepoortensis: NQK81_12795
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Entry
NQK81_12795 CDS
T08507
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aroo
Amycolatopsis roodepoortensis
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aroo03032
]
NQK81_12795
03400 DNA repair and recombination proteins [BR:
aroo03400
]
NQK81_12795
Enzymes [BR:
aroo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NQK81_12795
DNA replication proteins [BR:
aroo03032
]
Prokaryotic type
DNA Topoisomerases
NQK81_12795
DNA repair and recombination proteins [BR:
aroo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NQK81_12795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
KAAG1
Motif
Other DBs
NCBI-ProteinID:
UUV34284
LinkDB
All DBs
Position
2748088..2749095
Genome browser
AA seq
335 aa
AA seq
DB search
MRLRRADLASPGIRRRRRGRGFGYLTPDGEPLKDGETIERINALAIPPAWRRVWISPHEN
AHIQAVGIDDAGRKQYLYHPEWRRARDEEKHDRVLALARKLPKLRETVQEDLDSRGLKRE
RVLAGALRMIDLGVFRTGGESYADEHGTHGVATLLCEHVELRGECLVCDYPAKHGIQRKV
RLRDESLVRLVRSLRRVRGGAVRLLAYRDGDGWHEVKADDINDRLREIVGDGFTAKDLRT
WNATVLAASAFADTEKPSSERGLKRVEKTVMTEVAEGLGNTPAVARRSYVDPRVVEAYRR
DRTVARAVRRAAKAGSPDEARDIVERAVVRLLNGA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgcgacttcggcgagcggacctggcgtcccccggtatccggaggcggcgcagaggtcgt
ggcttcggctatctgaccccggacggcgagccgctgaaggacggggagacgatcgagcgg
atcaacgcgctcgcgataccgcccgcgtggcggcgcgtgtggatctccccgcacgagaac
gcccacatccaggcggtcgggatcgacgacgccggacggaagcagtacctctaccacccc
gaatggcgacgggcccgggacgaggagaaacacgatcgcgtcctcgcactggcgcggaag
ctgcccaagctgcgcgagacggtccaggaggatctcgactctcgcggcctgaagcgggaa
cgcgtgctcgccggcgccctgcggatgatcgacctcggggtcttccgcaccggtggcgag
agctacgccgacgagcacggcacccacggggtggcgacgttgctgtgcgagcacgtcgag
ctccgcggcgaatgcctggtgtgcgactaccccgcgaagcacggcatccagcggaaggtc
cggctgcgggacgagtccctggtgcggctggtccgctccctgcggcgggtgcggggcggc
gccgtgcgcctgctcgcctaccgcgacggtgacggctggcacgaggtgaaagcggacgac
atcaacgaccggctccgggaaatcgtcggcgacggtttcaccgccaaggatctgcgcacc
tggaacgccaccgtcctggccgcttcggccttcgcggacaccgaaaagccttccagcgaa
cgaggattgaagcgggtcgagaagaccgtgatgacggaagtcgccgaggggctcggcaac
acacccgccgtggcgcgacggtcctatgtggaccctcgggtggtcgaggcgtaccggcgg
gaccggaccgtcgcccgcgcggtacggcgagccgcgaaggccggcagtcccgacgaggca
cgcgacatcgtggagcgggcggtggtgcggctactgaacggggcgtga
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