Amycolatopsis roodepoortensis: NQK81_13585
Help
Entry
NQK81_13585 CDS
T08507
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aroo
Amycolatopsis roodepoortensis
Pathway
aroo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NQK81_13585 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aroo03400
]
NQK81_13585 (ligD)
Enzymes [BR:
aroo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NQK81_13585 (ligD)
DNA repair and recombination proteins [BR:
aroo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NQK81_13585 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Read-through
Motif
Other DBs
NCBI-ProteinID:
UUV34435
LinkDB
All DBs
Position
2890989..2891954
Genome browser
AA seq
321 aa
AA seq
DB search
MSTVPDAIAPMLATDGDLPTGGWGYEYKWDGYRCCLRVARDGETRLTSRRGLDITATYPD
VTAEALSGHEAVLDGEIVVLDEQGRPSFPLLQTRHLRTPDASLLERSPVHFFAFDVLFLD
GDALLDEPYEARREVLTSLGAGGRIAIPPGYTDDDISPDQLLDVVRQHGLEGLIAKKLDS
RYHPGKRTRQWIKRALWHTQEVVIGGWRPGDGRRAGTLGALLLGAHDEAGDLRYIGDVGT
GFSDKVLDDLHARLTPLERKKPPFASEVPRDRARRVHWVEPELVGEVVHRNWTPDGRLRH
TTWRGLRADKTPDDVRLPSAG
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtgccggacgcgatcgccccgatgctggcgaccgacggcgacctgcccacc
ggcgggtggggctacgaatacaaatgggacggctaccgctgctgcctgcgtgtcgcgcgc
gacggcgagacgcgtctgaccagccgtcgcggcctcgacatcacggcgacgtacccggac
gtgaccgcggaagcactgagcgggcacgaagccgtcctcgacggcgagatcgtcgtcctc
gacgagcaggggcggcccagcttcccgctgttgcagacccggcacctgcgcaccccggac
gcgtccctgctggaacgcagcccggtgcatttcttcgccttcgacgtgctgttcctcgac
ggtgacgccctgctcgacgagccatacgaggccaggcgcgaggtgctgacgtccctgggc
gccggcggccgcatcgccatcccaccgggttacaccgacgacgacatctcccccgatcag
ctgctcgacgtcgtccggcagcacgggctcgaagggctgatcgcgaagaagctcgacagc
cgctaccaccccggcaagcggacccgccaatggatcaaacgggcgctgtggcacacccag
gaggtcgtgatcggcggctggcggcccggcgatgggcggcgcgcggggacgctcggcgcg
ttgctgctgggcgcgcacgacgaagccggcgaccttcggtacatcggcgacgtcgggacc
gggttcagcgacaaggtcctcgacgacctgcacgcccggctcaccccgctggagcggaag
aagccaccgttcgcgtcggaggtcccgcgcgaccgggcccggcgggtgcactgggtggag
cccgaactcgtcggggaggtcgtgcaccggaactggacgccggacggccgtctgcggcac
acgacctggcgaggactgcgggcggacaagacacccgatgacgtcaggcttccctccgct
ggatga
DBGET
integrated database retrieval system
