Amycolatopsis roodepoortensis: NQK81_16495
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Entry
NQK81_16495 CDS
T08507
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
aroo
Amycolatopsis roodepoortensis
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroo03019
]
NQK81_16495 (hrpB)
Enzymes [BR:
aroo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NQK81_16495 (hrpB)
Messenger RNA biogenesis [BR:
aroo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NQK81_16495 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_30
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
UUV34980
LinkDB
All DBs
Position
3559382..3561775
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AA seq
797 aa
AA seq
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MTLPDLPVRAVLPELEAALAAHGTAVLVAPPGTGKTTLVPLALDNGEGRVIVAEPRRLAA
RAAAARMASLLGERVGETVGYSVRGDRKVSSSTRIEVVTSGLLVRRVQGDPELAGVSTVL
LDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVASGRLAALLGNAPVITAVARTY
PVDVSYSPPARGERIEATVARVIHKALSEGDGDVLAFLPGAGEIARVSGLLSGLDADVLP
LHGRLSAAHQDDALRPRARRRVVLSTSVAESSLTVPGVRAVVDCGLSRVPRVDHRRGLPG
LATVRVSAAVAEQRAGRAGREAPGRAYRCWAAHEQGSLPAYPEPEIRTAELARFALELAC
WSTPDGSGLAWWDPPGEGALAAGRALLTTLGATSEDGTVTDRGRKMAALGLHPRLARALL
DGAARTNARSAAEVVALLDSGGTLTDLEAELRRVRGDERWKRDVRRLSQLVPDGGNASDP
ALVVALAHPERLARRRSAGTPVYLMASGTAAELPRGSGLADVEWLAVAEATRDPGRAQGI
IRLAAPADEDLAVRAAPNLVSSVDEVRWSSGDVVARSVRRLGAITLAEKPLRSPAPDAIR
AALLDGLRAEGLGLLRWTEDGKRLRERLSFLHRVLGPPWPSVSDTDLLSTLDSWLDIGSA
RRRSDLAALDAGAALRGLLPWPEASRLDELAPDRLEVPSGSRIRVDYSGEQPVLAVKLQE
TFGWLATPKLAGVPVVLHLLSPAGRPAAVTADLESFWRNGYAAVRADLRGRYPKHPWPED
PLTAAPTRRTSRGQSIN
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
gtgacccttcccgatctgccggttcgcgcagtcctgcccgaactcgaagccgcgctcgcc
gcccatggcaccgccgtgctcgtcgcgccgccgggaaccggcaagaccaccttggtgccg
ctcgcgctggacaacggcgaaggccgggtgatcgtcgccgaaccgaggcggctggcggcg
cgggccgcggcggcgcgaatggcgtccctgctgggcgaacgggtcggtgagacggtcggc
tattcggtccgcggtgaccggaaggtgtcgtcctcgacgcggatcgaagtggtgacgtcg
ggtttgctggtccggcgggtgcagggcgatcccgaactcgccggagtgtcgaccgtcctg
ctcgacgaatgccacgaacgccatctcgacgcggatctgctgctcgcgctgctgctggac
gtacgcgccgggctgcgggacgacctgcgcctgctcgcgacatccgccaccgtggcgtcc
ggtcggctggcggccctgctcggcaatgcaccggtgatcacagcggtggcgcggacctac
ccggtcgacgtctcgtactccccgccggcgcgcggcgagcggatagaggcgaccgtcgcc
agagtgatccacaaagcactgtccgaaggggacggtgacgtgctcgccttcctgcccggc
gcgggagagatcgccagggtgagcggcctgctcagcggcctcgacgccgacgtgctgccc
ttgcacggacggttgtcggcggcacaccaggacgacgccctgcgcccgcgcgcccgccgc
cgggtggtgctctcgacgtcggtcgccgagtccagcctgaccgtgccgggcgtgcgcgcg
gtggtggactgcggcctgtcccgcgtgcccagggtcgatcatcggcgtggcctgcctggg
ctggcgacggtccgcgtgtcggccgcggtcgcggaacagcgcgccggccgggccgggcgt
gaggcaccgggccgcgcgtaccggtgctgggcggcgcacgaacagggctccctgcccgcg
tatcccgaacccgagatccggacggccgagctggcgcgattcgcgctggagctcgcgtgc
tggtccactccggacggttccggcctggcctggtgggatccacccggcgagggtgcgctg
gccgccgggcgcgcgttgctgaccacgctcggggcgacctcggaagacggcacggtgacc
gatcgcggccggaagatggccgcgctgggcctgcatccgcggctggcgagggcgttgctg
gacggcgcggcgcggaccaacgcgcgttcggcggccgaagtcgtcgcgctgctggacagc
ggcggcacgctgaccgacctcgaagccgaactgcggcgggtgcgcggcgacgaacgctgg
aaacgtgacgtgcgaaggctttcccaactggttcccgacggcggcaacgcctccgatccg
gcgctggtcgtggcgctcgcgcatcccgagcggctcgcgcgacggcgttccgcgggcaca
ccggtgtacctgatggcaagcggaacggccgccgaactcccccgcgggagcgggctggcc
gacgtcgaatggctggcggtggccgaagcgacccgggatcccggccgcgcgcaagggatc
atccggctggccgcgcccgcggacgaagacctcgccgtgcgcgccgcgccgaatctggtg
tcctcagtggacgaagtgcgctggtcttcgggtgacgtcgtcgcacggtcggtgcggcgg
ctcggcgcgatcactcttgcggagaaaccgttgcgctcgcccgcaccggacgcgatccgt
gccgcactgctggacggtttgcgcgccgaagggctcggcctgctgcgctggaccgaggac
ggcaagcggctgcgcgaacgactgtccttcctgcatcgcgtactcggaccgccttggccc
tctgtgtccgacacggatcttctgtctactttggacagctggcttgacatcggatcggcg
cgtcgccgatccgatctcgccgcactggacgccggcgcggcgctgcgcgggctcctcccc
tggcccgaagcgtcgcgtttggacgaactggcgccggaccggctggaagtaccgtcgggc
tcgcggatcagggtcgactactcgggtgaacagccggtgctcgccgtcaaattgcaggaa
accttcggctggctcgcgacgccgaaactggcgggcgtccccgtcgtgctccacctgctc
tcccccgcgggacggcccgccgcggtcaccgccgacttggaatcgttctggcgcaacggt
tacgcggccgtgcgcgccgaccttcgcggacgctacccgaagcacccgtggcccgaggac
ccgctgaccgccgcgcccacccggcgcacttcacgaggtcagtccatcaactga
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