Amycolatopsis roodepoortensis: NQK81_23305
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Entry
NQK81_23305 CDS
T08507
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aroo
Amycolatopsis roodepoortensis
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aroo03016
]
NQK81_23305
Enzymes [BR:
aroo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NQK81_23305
Transfer RNA biogenesis [BR:
aroo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NQK81_23305
Prokaryotic type
tRNA splicing ligases
NQK81_23305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
S6PP
Motif
Other DBs
NCBI-ProteinID:
UUV27763
LinkDB
All DBs
Position
complement(4908636..4909826)
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AA seq
396 aa
AA seq
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MYTAVEGSRVPIRMWADPTSVEDQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLLKLRRRIESAVPVGFGLHKTPVNPAK
VHGVGGWDAFWKSFGDLHPGVQDLHDRASRQIGSLGGGNHFIEVCLEQGGEDEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDPDLAVFVAGTPEMQAYRRDLFWAQDYAARN
RATMVALVKQALKDVVPQTTFDDAISCHHNYVAEETYDGVDLLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNESSFQSASHGAGRRMSRNKAKKLYTAEDLAAQTAGVECRKDSGV
VDEIPAAYKDIETVIKAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacacggcggtcgaaggctcgcgggttccgatccggatgtgggcggaccccacatcg
gtcgaggaccaggccatgcgacagctgcacaacgtcgccaacctgccgtgggtgcacggc
gtcgcggtcatgcccgacgtccactacggcaagggcgcgaccgtcggcagcgtgatcgcg
atgcgcgacgcggtgtccccggccgccgtcggcgtggacatcggctgcgggatgagcgcg
gtgcggacctcgctcaccgccgccgacctgcccgacgacctcctgaagctccgccgccgg
atcgaatcggccgtccccgtcgggttcggcctgcacaagaccccggtgaacccggccaag
gtgcacggtgtcggtggctgggacgcgttctggaagtccttcggcgacctgcatcccggc
gtccaggatctgcacgaccgcgcgtcgcgccagatcgggagcctcggtggcggtaaccac
ttcatcgaggtctgcctcgaacagggcggcgaggacgaaggccgcgtgtggctgatgctg
cactccggttcgcgcaacatcggcaaggaactcgcggaacggcatatggccgtcgcgcgg
aagctgccgcacaacgcggacctgccggacccggatctcgcggtgttcgtcgcgggcacg
cccgaaatgcaggcgtaccggcgcgacctgttctgggcgcaggactatgcggcgcgcaac
cgcgccaccatggtcgcgctcgtgaagcaggcgctgaaggacgtcgtgccgcagacgacg
ttcgacgacgcgatcagctgccaccataattacgtcgccgaagagacctacgacggcgtc
gaccttctggtgacccgcaagggcgcgatccgcgcgggttcgggcgatctcgggatcatc
ccgggcagcatgggcaccggttcgtacatcgtgcgcggtctcgggaacgagtcgtccttc
cagtccgcgtcgcacggcgcgggccgccggatgtcgcggaacaaggcgaagaagctgtac
accgccgaggacctcgcggcgcagaccgcgggcgtggagtgccgcaaggactccggtgtg
gtggacgagatcccggccgcgtacaaggacatcgaaacggtgatcaaggcgcagacggat
ctcgtcgaggtggtcgcgcacctcaagcaggtcgtctgcgtgaagggctga
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