Amycolatopsis roodepoortensis: NQK81_26525
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Entry
NQK81_26525 CDS
T08507
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
aroo
Amycolatopsis roodepoortensis
Pathway
aroo03030
DNA replication
aroo03430
Mismatch repair
aroo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQK81_26525
03430 Mismatch repair
NQK81_26525
03440 Homologous recombination
NQK81_26525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aroo03032
]
NQK81_26525
03400 DNA repair and recombination proteins [BR:
aroo03400
]
NQK81_26525
Enzymes [BR:
aroo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NQK81_26525
DNA replication proteins [BR:
aroo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NQK81_26525
DNA repair and recombination proteins [BR:
aroo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NQK81_26525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
TerB
Motif
Other DBs
NCBI-ProteinID:
UUV28354
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All DBs
Position
5575362..5576915
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AA seq
517 aa
AA seq
DB search
MAETVENLALTPDGRFAVGTTEFTAIDFETTGLHPGHVVEVAAVRIRADGAVLREFSTLV
NPGPGVDPGPAHVHRITRRELDDAPYLGEVLGDFLDVCQGSVLVGHNLPFEARFLDGESG
RMGARIPAMPGVCTLAAARRALRLPNYRLGTVAEAVGVGEFAAHTALADAYVCARIVTTL
VNTHGLRFVERPVFPELPRFAPAARLAPRRVVVPSGGTWMADFVDRVPEAAFGAGGSLQD
AYVELLGNALADRHISDAEARALGAAASAAGMSDADLHRVHTGFVTAMRELAESDGVITA
EEERDLRAVAAALRVPETLHGLRATAASSAARRRVLVLGDGLAEDDLRAAVLDAGLQLAK
KLTASVTHLAVGSGVPRAEPRIARAGELGAKVLGVDEAREVLGLAPRPAPAPIPVPQPAP
IPAPAAPVRRPVYAAEQRTAVFTPPPQAPVPHGYVPPVPSPPSVKLWGGRVLMGFGMLLM
FITVLALFGGAGLAAGLFVGVLGVGGLLGGWQIAVRA
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggcggagacagtcgaaaatctcgcgttgactccagacggccggttcgccgtggggacg
accgaattcaccgccatcgacttcgagaccaccggcctgcacccagggcacgtggtcgag
gtcgcggcagtgcgcatccgggcggacggcgcggtcctgcgggagttttcgacgttggtc
aacccgggccccggcgtggaccccggtcccgcccacgtgcaccggatcacccggcgggag
ctcgacgacgctccctacctcggcgaagtgctgggcgactttctcgacgtctgtcagggc
agtgtcctggtcggacacaacctgcccttcgaagcgcgattcctcgacggggagtccggc
aggatgggcgcgcggatcccggcgatgccgggagtgtgcacgctggccgcggcgcggcgc
gcgctgcggttgccgaactatcgcctgggcacggtggccgaggcggtcggtgtcggcgag
ttcgcggcgcacacggcgctcgccgatgcctacgtgtgcgcccggatcgtgacgacgctg
gtgaacacgcatggcctcaggttcgtggaacggccggtgttccccgaactgccgcggttc
gcgcccgccgcgcgcctggcgcctcgccgtgtggtggtgccgagcggtggcacctggatg
gcggacttcgtcgaccgggtacccgaggccgcgttcggagcaggtggctcgctgcaggac
gcctatgtcgaattgctcgggaacgccttggcggaccggcatatttccgacgccgaggcg
agagccctcggcgcggcggcctcggcggcggggatgtcggacgccgatctgcaccgcgtg
cacaccggtttcgtcacggcgatgcgcgagctcgccgaaagcgacggcgtcatcaccgcg
gaggaagaacgggacctgcgggcggtcgcggcggctttgcgggtacccgaaacgctgcac
ggactccgggccacggcggcctcgtccgccgcgcgtcgccgcgtcctcgttctcggcgac
gggctggcggaggacgacttgcgcgccgcggtactcgatgcgggccttcagctcgcgaag
aagctcaccgcgtcggtgacccacctggccgtgggttccggagtgccccgtgccgagccg
cggatcgccagggcgggtgaactcggggcgaaggtgctcggagtcgacgaggcacgtgaa
gtgctgggtctcgctccacggccggcacccgcgccgatccccgtcccacagcctgccccg
attccggctcccgccgctccggtgcgccggccggtctacgccgccgaacagcggaccgcc
gtcttcacgccgcctccacaggcacctgttccgcacgggtacgtgccgcccgtgccgtcc
ccgccttcggtgaagctgtggggcggccgggtcctcatggggttcgggatgctgctcatg
ttcatcacggtgctcgcgttgttcggcggcgcggggctcgccgcgggtctcttcgtgggc
gtgctgggcgtcggtggtctgctcggcggctggcagatcgccgtcagggcttga
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