Amycolatopsis roodepoortensis: NQK81_33455
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Entry
NQK81_33455 CDS
T08507
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aroo
Amycolatopsis roodepoortensis
Pathway
aroo03030
DNA replication
aroo03430
Mismatch repair
aroo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQK81_33455 (dnaE)
03430 Mismatch repair
NQK81_33455 (dnaE)
03440 Homologous recombination
NQK81_33455 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aroo03032
]
NQK81_33455 (dnaE)
03400 DNA repair and recombination proteins [BR:
aroo03400
]
NQK81_33455 (dnaE)
Enzymes [BR:
aroo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NQK81_33455 (dnaE)
DNA replication proteins [BR:
aroo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NQK81_33455 (dnaE)
DNA repair and recombination proteins [BR:
aroo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NQK81_33455 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UUV29640
LinkDB
All DBs
Position
6972300..6975821
Genome browser
AA seq
1173 aa
AA seq
DB search
MDSFVHLHVHTEYSMLDGAAKIAPLFAEARRLGMPAVGMTDHGNMYGADEFYRQSVQAGL
KPVIGIEAYLAPESRFHKKPVTWGRRGDGGDVSGGGAYTHMTMLAENATGLRNLFKLSSL
ASLEGYYRKPRMDRELLARHHEGVIATTGCPSGEVQTRLRLGQPGEAIQAASDYRDIFGA
DDFFLELMDHGLPIERSVRDGLLDIGRRLGLKPLATNDSHYVTRDKAAAHSALLCVQSGK
TLDDPGRFKFDGDGYYLKSAEEMREYWDTEVPGAADSTLLIAERIEPYDDVYRHVDRMPV
FEVPDGHDEESWLREEVAAGLRRRLPDGVPEAYLARADFEIGVIAEKGFPAYFLITADLM
NHARRVGIRVGPGRGSAAGSLVAYALGITNLDPIDLGLLFERFLNPERVSMPDIDMDFDD
RRRGEMIRYATDKYGAEHVAQVITFGTIKTKAAIKDAARVHYGQSGYAIADRISKALPPP
VAAKDIPLAGIVEPGHERYAEAAEVRALLEGDGEAAKIFETARGLEGLIRNAGVHACAVI
MSSEPLLDAIPLWRRDDGAVITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALDNIKANRG
EEIDLDTLGVEDPATYELLARGDSLGVFQLDGGAMRDLLRRLRPTGFGDIIAVNALYRPG
PIAMNTHNNYADRKNGRQPIESIHPELAVPLREILAETHGLIVYQEQIMRIARDVAGYSM
GRADVLRKAMGKKKKEVLEKEFEGFRDGMVANGFSREAVQALWDAILPFAGYAFNKSHAA
GYGLVGYWTAYLKANYPAEYMAGLLTSVGDNKDKSAVYLSECRRLGIKVLPPDVNESGLR
FSAVGDAIRFGLGAVRNVGANVVDAIIKTRQEKGKYASFTDFLGKSELVACNKRVIESLA
KAGAFDSLGHTRLSIQRVHEDAVDAVVPLKRKQAMGQFDLFGPGEGSGDGTSPLAHLKLG
VEEWPRKELLAHEREMLGLYVSAHPLDGAEHVLRAHAPRPIAAILDNPPREGELVIAGIV
TSLERRVNKKGEPWAICTIEDLDAALEVLFFPKAYALFAADLAEDGAVRVSGRVNWREDK
MSVFGGGLVPLDLSAAGDGEPPLTLHATAERLTEDAVLELKRTLLAHKGKTPVRVELGGT
LYALDDYPVAVSSMLLGELKSIPGVTPSCAGAT
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtggactccttcgtgcacctgcacgttcataccgagtactcgatgctcgacggcgcggcc
aagatcgcgcccctgttcgcggaggcccggcggctcggcatgcccgcggtgggcatgacc
gaccacgggaacatgtacggcgcggacgagttctaccggcagtccgtccaagcggggctc
aaaccggtgatcggcatcgaggcctacctcgcaccggagtcccgtttccacaagaagccg
gtgacctggggacggcgcggtgacggcggcgacgtctccggtggtggcgcctacacgcat
atgaccatgctggcggagaacgccaccgggttgcggaacctgttcaagctgtcttcgctg
gccagcctggagggttactaccgcaaaccccggatggaccgtgaacttctcgcccggcac
cacgaaggcgtcatcgccaccaccggatgcccgtcgggcgaggtgcagaccaggctccgg
ctcgggcagcccggcgaggcgatccaggcggcgtcggactaccgcgacatcttcggcgcg
gacgacttcttcctcgaactgatggaccacgggctcccgatcgaacggtccgtgcgggac
gggttgctggacatcggccgcagactcgggctgaaacccttggccaccaacgattcgcat
tacgtcacgcgggacaaggccgccgcgcattcggcgctgctgtgcgtccagtccggcaag
accctcgacgatcccggccggttcaagttcgacggcgacggctactacctcaagtccgcg
gaggagatgcgggagtactgggacacggaggtccctggcgcggcggactccacgctgctc
atcgccgaacggatcgagccgtacgacgacgtctaccggcacgtcgatcgcatgccggtc
ttcgaggtccccgacggacacgacgaggagtcctggctgcgcgaggaggtcgcggccggg
ctccgccgccgactgccggacggtgttcccgaggcgtacctcgcccgcgccgacttcgag
atcggcgtgatcgccgaaaagggcttcccggcgtacttcctgatcaccgccgacctgatg
aaccacgcccgccgcgtcggcatccgcgtcgggccgggccgcggctcggcggcgggctcg
ctcgtggcgtacgcgctcggcatcaccaatctggacccgatcgatctcggcctgctcttc
gaacggttcctcaacccggagcgggtctccatgccggacatcgacatggacttcgacgac
cggcgccgcggcgagatgatccggtacgccaccgacaagtacggcgccgagcacgtcgcc
caggtgatcacgttcggcacaatcaagacgaaggcggccatcaaggacgccgcacgcgtc
cactatggacagagcgggtacgcgatcgcggaccggatctcgaaagccctccctccgccc
gtcgcggcgaaggacatcccgctcgccgggatcgtcgagccgggccacgagcggtacgcc
gaagcggcggaagtccgcgcgctgctggaaggcgacggcgaggcggccaagatcttcgag
accgcgcgcggactggaaggcctgatccgtaacgcgggggtgcacgcctgcgccgtcatc
atgtcgagtgaaccgctgctcgacgcgatcccgttgtggcgccgggacgacggcgcggtc
atcaccgggtgggactacccgtcgtgtgaggccatcggcctgctgaagatggacttccta
ggcctgcgaaacctcaccgtcatcggcgacgcgctcgacaacatcaaggccaaccgcggc
gaggagatcgatctcgacaccctcggcgtcgaggatccggcgacctacgaactgctcgcc
cgcggcgacagcctcggtgtcttccagctcgacggcggcgcgatgcgggatctgctgcgc
aggctgaggccgaccggattcggcgacatcatcgcggtgaacgcgttgtaccggccgggt
ccgatcgcgatgaacacgcacaacaactacgcggaccgcaagaacggcaggcagccgatc
gagtcgatccatcccgagctcgccgtgccgctgcgcgagatcctggccgagacgcacggc
ctgatcgtgtaccaggaacagatcatgcggatcgcgcgggacgtcgcgggctactccatg
gggcgcgccgacgtgctgcgcaaggcgatgggcaagaagaagaaagaggtactggagaag
gagttcgagggtttccgcgacggcatggtcgccaacggcttctcgcgcgaggccgtgcag
gccctttgggacgcgatcctgccgttcgccggctacgcgttcaacaagtcccacgccgcc
ggctacggcctggtcggctactggaccgcgtatctgaaggcgaattacccggccgagtac
atggcgggcctgctgacttcggtgggggacaacaaggacaagtcggcggtctacctctcg
gaatgccgtcgcctggggatcaaggtgctgccgccggacgtcaacgaatccgggctccgg
ttctccgcggtgggggacgcgatccggttcgggctgggcgcggtgcgcaacgtcggcgcg
aacgtcgtcgacgcgatcatcaagacccggcaggagaaggggaagtacgcgtcgttcacc
gacttcctcggcaagtcggaactggtggcctgcaacaaacgtgtcatcgaatccctggcc
aaggcgggggcgttcgattcgctcgggcatacgcggctttcgatccagcgagtgcacgag
gacgcggtggacgccgtggtgccgctgaagcgcaagcaggcgatgggccagttcgacctc
ttcgggccgggtgaggggagcggcgacggcacctcgccgctcgcgcacctcaagctcggt
gtcgaagagtggccccgcaaggaactgctcgcgcacgaacgggaaatgctcgggctgtac
gtgtccgcgcatccgctcgacggcgccgaacacgtcctgcgggcgcacgcgccgcggccg
atcgcggcgatcctcgacaacccgccgcgcgagggtgaactggtcatcgccgggatcgtc
acgtcactggagcggcgggtgaacaagaagggcgagccgtgggcgatctgcactatcgag
gatctggacgccgcgctcgaagtgctgttctttcccaaggcgtacgcgctgttcgcggcg
gatctcgccgaggacggcgccgtccgcgtcagcggccgggtgaactggcgggaggacaag
atgtcggtgttcggcggcggcctcgtgccactcgatctctccgcggcgggcgacggggag
ccgccgctgacgctgcacgcgaccgccgagcggctgaccgaggacgcggtcctcgaactg
aagcggactttgctggcgcacaagggaaaaaccccggtccgcgtcgaactcggcgggacg
ttgtacgcgctcgacgactatccggtcgccgtgagttcgatgcttctcggcgagctgaag
tccatccccggcgtcacaccgagctgcgccggagcaacctga
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