Arcobacter roscoffensis: NJU99_00420
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Entry
NJU99_00420 CDS
T09051
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aros
Arcobacter roscoffensis
Pathway
aros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NJU99_00420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aros03019
]
NJU99_00420
03009 Ribosome biogenesis [BR:
aros03009
]
NJU99_00420
Enzymes [BR:
aros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NJU99_00420
Messenger RNA biogenesis [BR:
aros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NJU99_00420
Ribosome biogenesis [BR:
aros03009
]
Prokaryotic type
rRNA helicases
NJU99_00420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
PIF
Motif
Other DBs
NCBI-ProteinID:
UTJ06589
UniProt:
A0ABY5E365
LinkDB
All DBs
Position
77296..78801
Genome browser
AA seq
501 aa
AA seq
DB search
MTFNEFNLKEDLQKAIDSAGFQEPSPIQEKAIPVVLSGKDIVGQAQTGTGKTAAFGLPIL
NMMKCDGSVEAVIIVPTRELAMQVSDEIFRFGKFLGINTATVYGGQSYSRQLKNISNASV
LIATPGRFLDLLRDKKINIKPSYVVLDEADEMLDMGFLDDIKEIFTFMPDARQTVLFSAT
MPTAIKNLAKTILVEPEFITITKKEVTNSKITQTYYVVDEHERDDALIRLFDFKNPDKSI
IFCRTKKEVDRLSTFLVSLGYMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGL
DVSDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAVSIVTPHEFRMLKKIEKTTGSKLE
AKQVPNISSVKEKKVTDLKQKITNQDVKDHALQLVEDLKEEFDISTIAFKLASMISESTY
VKGNNKIGKSENDIERLIERAKNSSGSDKRGGNRNSRGGHRGGSRNGSRGGSNGRRDSRN
RDSRGPRGGSSSGGSRNRRRD
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgaatttaatttaaaagaagatttacaaaaggcgatagacagtgctgga
tttcaagagccaagtcctattcaagagaaagcaattcctgttgttttaagcggtaaggat
attgtaggacaagctcaaactggtactggaaaaacagctgcatttggtcttccaatatta
aatatgatgaagtgtgatggttcggttgaagcagttataatagttccaacaagagagctt
gcaatgcaagtttctgatgaaatttttaggtttggaaaatttttaggtattaatacagca
actgtttatggtggacaatcatattcaagacaattaaagaacatttcaaatgcaagtgtt
cttattgcaacaccaggtagatttttagatttattaagagacaagaaaataaatattaaa
ccatcttacgtagttttagacgaagctgatgagatgttagatatgggattcctagatgac
attaaagagattttcacttttatgcctgatgctagacaaacagttcttttctctgcaaca
atgcctacggcgattaaaaatctagctaaaacgattttagttgagcctgagtttattaca
attacaaagaaagaagtaactaactcaaaaattactcaaacatattatgtagttgatgag
catgaaagagatgatgctttaatcagactatttgattttaaaaacccagataaatcaatc
attttttgtagaacaaaaaaagaagttgatagattatctacatttttagtatctttagga
tacatggctaagggtcttcatggtgatatggagcaaagacaaagagaagaagctattaga
gcttttaaaacatctaaattagaaatcttaattgcaacagatgttgcagcaagaggactt
gatgtaagtgatgtaactcacgtatttaattaccatttaccatttgattctgagtcttat
gtacatagaattggtagaactggtagagcaggaaaagaaggtatggcagtttcaattgta
actccacacgaatttagaatgcttaagaaaattgaaaaaactacaggttctaaacttgaa
gcaaaacaagttcctaatatctcttctgtaaaagagaaaaaagttactgatttaaaacaa
aagattacaaatcaagatgttaaagatcacgctttacaacttgttgaagacttaaaagaa
gagtttgatatttcaactattgcatttaaattagcttcaatgatttctgaatctacttat
gttaaaggtaacaataagataggtaaatcagaaaatgatattgaaagattaattgaaaga
gctaaaaatagtagcggttctgataaaagaggcggaaatagaaactcaagaggtggacac
agaggtggatcaagaaatggttcaagaggtggaagcaatggaagaagagattctagaaat
agagactcaagaggtcctagaggtggaagctcaagtggtggaagcagaaatagaagaaga
gattaa
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