Arcobacter roscoffensis: NJU99_08725
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Entry
NJU99_08725 CDS
T09051
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
aros
Arcobacter roscoffensis
Brite
KEGG Orthology (KO) [BR:
aros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aros03019
]
NJU99_08725 (hrpB)
Enzymes [BR:
aros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NJU99_08725 (hrpB)
Messenger RNA biogenesis [BR:
aros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NJU99_08725 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
HA2_N
Flavi_DEAD
PfkB
Gp_dh_N
Motif
Other DBs
NCBI-ProteinID:
UTJ05351
LinkDB
All DBs
Position
complement(1865950..1868448)
Genome browser
AA seq
832 aa
AA seq
DB search
MTNFSINEVIPQIKEVLQNKSNLIIEAPAGAGKSTIVPISLLKESWLEDKIIIVLEPRRV
AAIAVASQMARLLGEQVGQTVGYQIKLDSKKSSKTKVLVVTEGILTRMIQSDQALEKCAC
VIFDEFHERSINTDLGLALCLQAQELLREDLKIVLMSATLQAKELQETLCNFELIKSDGR
MFEVKDIYLPLDIKHPSIKDLDKLLESIVLKALKENEGDVLVFLAGFKEINNLKKLLELS
LKEDILISPLHSNLSKEEQNIAINKNEKRKVILSTNIAQTSLTIEGVKVVIDSGLEKISR
YDFTTGMDHLEYSFICEDSAIQRAGRAGRLSKGLCYKLWHQKRILNPSSTPEILRVDLSS
FLLDTSLWGVQDLEELTLLDRPKKEFENSSKELLKSLELLDEKGNITSLGEDVLNLGIHP
RLGFMILKANEVGFAKQSCITASLLIENDILKTDSKDFMRRFEAVYEQTNLNNINLNRLN
IVKKQADMFFTRLNKIKEIKREKSFDKNLLGVILLFAYPDRLAKKRVSSDNTYALSNKKA
AIISDENLQRNEYLVAVNISAKQTNSYINQALAIDFKLLDKYLKNHFTTSIESINKDNFE
LYEVLKFEQLVISYKKASSISKEEYINAILDFIKTKGVKQTLNFDKKALSLQNRINFYNK
AKKQNYKCDLDLMDFSDEYLSSSVEIWLKPFLNNIKKFEDLQKLDIYTILLSNINYEVFQ
SFDKEVPTHINVPSGSKIKIDYSDSSCAVLAVKIQEVFSLHQTPKVLNNQIPLTIHLLTP
AQRPIQITQDLRSFWDNSYEEVRKELRGKYKKHYWPENPYDAVPTNRVKKNM
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacttttcaataaacgaagtaatacctcaaataaaagaggtattacaaaataaa
tcaaatctaataattgaagctcctgctggagctggtaaaagtactatagttcctattagc
ttactaaaagaatcatggcttgaagataaaataattattgttttagaaccaagaagagta
gcagctattgctgttgcatctcaaatggcaagacttttaggtgaacaagtagggcaaaca
gtaggttatcaaataaaactagatagtaaaaaaagtagtaagacaaaagttttagttgta
actgagggaattctaacaagaatgatacagtctgatcaagctttagaaaagtgtgcttgt
gtgatttttgatgagtttcatgaaagaagtattaatactgatttaggccttgctttatgc
ttacaagctcaagagctattaagggaagatttaaaaatagttttaatgtcagcaacacta
caagcaaaagaacttcaagaaactttatgtaattttgaacttataaaaagtgatggacga
atgtttgaggttaaagatatatatttacctttagatataaaacatccctcaataaaagat
ttagacaaacttttagaaagcattgtattaaaagcattgaaggaaaatgaaggagatgtt
ttagtttttcttgcaggttttaaagaaataaataatctaaaaaaactattagaacttagt
ttaaaagaagatattttaatatcaccccttcactcaaacctatcaaaagaagaacaaaac
atagcaataaataaaaatgaaaaaagaaaagttatattatctacaaatattgctcaaact
tctctaacaattgagggtgttaaagttgtaattgactcaggtttagagaagatttcaaga
tatgactttacaactggaatggatcatttagaatactcttttatttgtgaagatagtgca
attcaaagagctggaagagctggtagattaagtaaagggctttgttataaactttggcat
caaaaaagaatattaaatccaagttcaacacctgaaattttaagagttgatttaagttca
tttttattagatacatcactttggggtgtacaagacttagaagagttaaccttacttgac
agacctaaaaaagagtttgaaaatagttcaaaagaactacttaaaagtttggaacttctt
gatgaaaaaggaaatatcacttctttaggtgaagatgttttaaatttaggtattcatcca
aggctaggttttatgatattaaaagcaaatgaagttggttttgcaaagcaatcttgtata
acagcttccttattaatagaaaatgatattctaaaaactgattctaaagattttatgaga
agatttgaagctgtatatgaacaaacaaacttaaataatataaatctaaatagactaaat
attgtaaaaaaacaagcagatatgttttttacaaggcttaataaaataaaagaaataaaa
agagaaaagagctttgacaaaaaccttttaggtgtaatattactttttgcatatcctgat
aggttggctaaaaaaagagtaagttcagataatacttatgctttaagtaacaaaaaagct
gcaattataagtgatgaaaaccttcaaagaaatgagtatttagtagctgtaaatataagt
gcaaaacaaacgaactcttatattaatcaagctttagctattgattttaagctcttagat
aagtatttaaaaaatcattttaccacttctattgaatctataaataaagataattttgag
ttgtatgaagttttgaagtttgaacagcttgttatttcttacaaaaaggcaagttctatt
tcaaaagaagagtatataaatgccattttagattttattaaaacaaaaggtgtaaaacaa
actttgaattttgataaaaaagcattaagtcttcaaaacagaataaacttttataacaaa
gcaaaaaaacaaaactataaatgtgatttagacttaatggatttttctgatgagtattta
agtagtagtgttgaaatatggctgaaaccatttttaaacaatattaagaagtttgaagac
ttgcaaaaacttgatatttatacaatacttttatcaaatataaattatgaagtttttcaa
agttttgataaagaagtgcctacacacataaatgtaccaagtggatcaaaaataaaaata
gattattcagattcttcatgtgctgttttagcagtaaaaatacaagaagttttttcacta
catcaaacgcctaaggttttaaataatcaaatacctttaacaatacatcttttaactcca
gcacaaagaccaatacaaataacacaagacttaagaagtttttgggataactcttatgaa
gaggtaagaaaagagctaagaggaaaatacaaaaaacattattggcccgaaaatccctat
gatgctgtgcctacaaatagagtaaagaagaatatgtag
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