Anguilla rostrata (American eel): 135233523
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Entry
135233523 CDS
T10705
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135233523 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135233523 (mtrex)
03041 Spliceosome [BR:
arot03041
]
135233523 (mtrex)
03009 Ribosome biogenesis [BR:
arot03009
]
135233523 (mtrex)
03016 Transfer RNA biogenesis [BR:
arot03016
]
135233523 (mtrex)
Enzymes [BR:
arot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135233523 (mtrex)
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135233523 (mtrex)
Spliceosome [BR:
arot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135233523 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
135233523 (mtrex)
Ribosome biogenesis [BR:
arot03009
]
Eukaryotic type
Pre-60S particles
Helicases
135233523 (mtrex)
Transfer RNA biogenesis [BR:
arot03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135233523 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
Stealth_CR1
Motif
Other DBs
NCBI-GeneID:
135233523
NCBI-ProteinID:
XP_064153221
LinkDB
All DBs
Position
10:40761927..40781663
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEEQPSSKKRKSTGAGAHAGKDGQHGKDKAEQSSAAPGKQDLDDGPD
EVFGKKPKLETVSAEEINLADLMPKVKVEQVETVEGCTHEVALPANEDYTQLKPRVGKAA
KEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRP
TPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSGGSSGNKWDPKGRKGGT
RGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDEEKKLVEEVFSNAI
DCLSDEDKKLPQVEHVLPLLKSGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPTVG
KQLLKGSADPLNSAFHLTYNMVMNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMRKL
EVLYNAIEIPNEESVVTYYKIRQQLVKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGAVVNFSKKSNVKGNTGELDPLYVVEVLVHCSKDSVKNAATESAKPARPGEKGEMQV
VPVMLHLLTTISSVRLYIPKDLRPPDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLEAVYTLCEKKAQVAGDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQATAL
LSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLNAFRPHLMD
VVYTWANGSSFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagatgagctgttcagtgtatttgaggaggaacaaccatcctcc
aagaaacgaaaaagcactggtgctggagctcatgcagggaaagacggtcagcatgggaaa
gacaaggctgaacagagttctgcagctccgggcaagcaagacctggacgatgggccggac
gaggtttttgggaagaagcccaagctcgagactgtatctgcagaggaaataaatcttgca
gacctgatgcccaaagtcaaagtggaacaggttgagactgtggaaggctgcactcatgag
gtggccctgccagccaatgaggattacacacagttgaagcctcgagttggaaaagcagct
aaggagtaccctttcattctggatccgttccaaagggaggcgatcctctgcatcgacaac
aaccagtctgtcctggtttcagcccacacctctgctggaaagaccgtctgtgctgaatac
gccatcgccctggctttgagagagaagcagcgggtcatattcaccagccccatcaaagcc
ctcagcaaccagaagtaccgggagatgtacgaggagttccaggacgtgggcctcatgacc
ggcgatgtcaccatcaaccccactgcttcctgtctggtcatgaccactgagattttaaga
agcatgttgtaccgagggtcagaggtcatgagagaggtggcttgggttgtctttgatgag
atccattacatgagggattcagagcgtggtgttgtgtgggaggagaccatcatcctcctt
ccagacaacgtgcactacgtcttcctatccgccaccatccccaatgccaggcagtttgcc
gaatggatctgccatcttcacaagcagccatgtcacgtggtctacacagactatcgcccc
actccgctgcaacactacatatttccagcaggtggcgacggacttcaccttgtagtggac
gagaatggcgaatttcgcgaggacaacttcaacacggctatgcaggtgctgagagacgcc
ggggactctgggggcagcagtggtaacaagtgggaccccaaaggccggaaagggggcaca
agagggccctccaacgtcttcaagatcgtcaagatgattatggagcggaacttccagccc
gtcatcatcttcagcttcagcaagaaggagtgcgaggcctacgctctgcaggtggccaag
ctggacttcaacacagatgaagagaagaagcttgtggaggaggtattcagcaatgccatc
gactgtttgtccgatgaagacaagaagctcccgcaggtggagcacgtcctgcccctgctg
aagagtgggatcgggatccaccacggaggactgctccccatcctgaaggagaccatagag
atcctgttctcagaggggctgatcaaggccctgtttgccacggagacctttgccatgggg
atcaacatgccggccagaacggtgctgttcacaagcgctcgcaagttcgacgggaaagat
ttccgttggatcacttctggggagtacatccagatgtcgggccgggctggcagacgtggc
atggacgagaggggcatcgtcatcttcatggtggacgagaagatgagcccgacggtcgga
aagcagctcttgaagggatcagctgaccccttgaacagcgccttccacctgacgtacaac
atggtgatgaacctgctgcgggtggaggagatcaaccccgagtacatgctggagaagtcc
ttctaccagttccagcactaccgggccgtgcccggagtcgtagagaaaatgaggaaactg
gaagtgctctataatgcgatagaaatccccaacgaggagagcgtggtgacgtactacaag
atccgccagcagctggtgaagctggggaaggagatagaggagtacgtccacaagcccaaa
tactgcctgccgtttctacagcccggaaggctggtcaaggtcaaaaatgaaggtgatgac
tttggatggggagctgttgtcaatttctccaaaaaatcaaatgtgaaggggaacacgggg
gagctggaccccctgtacgtggtggaggtgctggtgcactgcagcaaggacagcgtgaag
aacgccgccacggagtccgccaaacccgcccggcccggggagaagggcgagatgcaggtc
gttcccgtcatgcttcatctcctcacgaccatcagctcggtgcgcctgtacatccccaaa
gacctgcgccccccggataacaggcagagcgtgctcaagtccatacaggaagtgcagaaa
cgtttccccgacggcgtgcccctcctggaccccatcgacgacatgggcatcaaggaccag
ggcctgaagaaggtcatccagaaagtggaggccttcgagcacaggatgtactctcacccc
ctacacaacgaccccaacctggaggctgtctacaccctctgcgagaagaaggcacaggtc
gcgggggacatcaaggcggcaaagcgggagctgaagaaggcgcgcaccgtgctgcagatg
gacgagctcaagtgcaggaagcgcgtgctgcggcgcctgggcttcgccacttcctctgac
gtcatcgagatgaagggccgcgtggcctgcgaaatcagcagcgcggacgagctgctgctg
acggagatgatcttcaacggcctgttcaacgacctgactgccgaacaagccacggccctc
ctcagctgcttcgtgttccaggagaacgcgaacgagatgccaaagctgaccgagcagctg
gcaggacccctccgacagatgcaggaatgcgccaagcgcatcgccaaggtgtcggccgag
gccaagctggaggtggacgaggagacgtacctcaacgccttccgcccccacctgatggac
gtggtgtacacctgggccaacggctcctccttcgcacagatctgcaagatgaccgacgtt
ttcgaaggaagtatcattcgctgtatgaggcgcctggaggagctgctgaggcagatgtgc
caggcagccaaggccatcggcaacaccgagctggagaacaagttcgccgaaggtataacg
aaaatcaagagggatatcgtgtttgctgccagtctttatttgtaa
DBGET
integrated database retrieval system
