Anguilla rostrata (American eel): 135234197
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Entry
135234197 CDS
T10705
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135234197 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135234197 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135234197 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
arot00535
]
135234197 (col9a3)
Proteoglycans [BR:
arot00535
]
Extracellular matrix (ECM) proteoglycans
Others
135234197 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135234197
NCBI-ProteinID:
XP_064154611
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All DBs
Position
11:19011274..19038344
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AA seq
677 aa
AA seq
DB search
MAAFSALWLLLLCQLLTSLAQRPGPRGPPGLPGTPGPPGKDGTDGKPGPSGLPGKSGPKG
KAGEPGSAGSAGLPGLPGVDGLTGPDGPAGKDGPPGQRGDAGPPGPAGPPGRGRTGAPGP
PGANGLQGGVGPLGPVGAEGAQGLPGLPGPDGPPGLPGALPDGTGEVLCPAICPPGPAGA
TGMPGFKGHTGHKGDKGEAGKDGEKGDPGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVGD
RGLPGFRGKPGIAGVIGKTGDAGEKGPEGFKGPKGEIGKIGPKGVPGGSGPKGEPGIPGR
DGKDGTQGLDGEKGDAGRSGVPGEKGPNGLPGLQGKAGGKGSKGGVGDQGKMGEAGPSGE
PGIPGEIGIPGERGEAGPRGLAGGIGPIGNIGSQGVKGFQGLKGALGDPGLPGPTGIRGG
FGDRGPVGASGLKGDMGVAGSDGLPGENGELGPFGPVGQKGESGKRGEVGPKGVVGPQGE
LGARGAPGKPGLMGFQGEQGMSGIAGKTGVPGKLASEQHIRELCGGMIDDQIAQLAANLR
RPLAPGMVGRPGPAGPPGQPGAAGSIGHPGTRGPPGYRGLPGDLGDPGPRGDVGEPGDKG
PIGKAIEGPSGDQGHQGLPGVLGIVKHGRDGAPGDPGEPGEAGRAGSTGHQGSPGICDTS
ACQGASIAGKSSNPKNH
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttttcagctctttggctactccttctttgccagcttttgacatctctagca
cagagacccggccctcgaggaccacctggcctgccaggaaccccaggacccccagggaaa
gatggcaccgatggtaaacctggcccatctggacttcctgggaaatctggccctaaagga
aaagcaggggagcctgggtctgcaggaagtgcagggttgcctggacttccgggagtggat
ggtctgactggtccagatggcccagctggaaaagatgggccaccaggacaaagaggggat
gccggaccacctggcccagcaggacctcctggcagagggagaacaggagccccagggcca
cccggagccaatgggctgcagggcggagtcgggccactgggcccagtgggtgctgaagga
gcccaaggactgcctggcctccctggccctgatggccccccaggtctcccgggggccctc
cctgatggcactggagaagttctgtgtccagccatctgtccaccaggcccagctggagct
accggcatgccaggattcaagggtcacacagggcacaaaggagacaagggagaggctggg
aaggatggagaaaagggtgaccctggcccacctgggcctcccgggattcctggcactgtg
ggcctacagggccctcgcggattgagaggactccagggcccaatgggtgcagtcggagac
aggggtttaccaggtttccgtggcaaacctggaatcgccggtgtcattgggaaaacaggt
gatgctggagagaaaggacctgaaggtttcaaagggccaaagggagaaattggcaaaatc
ggtcccaaaggtgttcctgggggctctggtcccaaaggagagcctggtatacctggcaga
gacgggaaagatggcacacaagggttagacggggagaagggtgatgctggccgatctgga
gttcctggtgaaaaaggtcccaacggccttcctggtttacaaggaaaggctggtggaaaa
ggatctaaaggaggggttggtgatcaaggaaagatgggagaggcaggtccatctggagag
ccaggtattcctggtgagattggaattccaggagagcggggagaggctggacctagagga
ttggcaggaggtattggaccaataggaaacatcgggtctcagggtgtcaaaggcttccag
ggcttgaaaggtgctcttggggaccccggccttccaggcccaacaggaatccgtggagga
tttggtgacaggggtccagtcggagcatcgggactcaaaggggacatgggtgttgcagga
agtgatggccttccaggagagaacggagagctgggcccatttggtcctgttggacaaaaa
ggggagtccggaaagaggggtgaggtagggccgaagggagtggttggtccccagggagaa
cttggggccagaggagcccctgggaagcctggactcatgggcttccaaggagagcagggc
atgtctggcatcgctggaaaaactggcgttcctggtaaactggcaagtgaacagcacatc
agagagctgtgtggaggaatgatagatgatcagattgcccagctggctgccaacttgagg
agacctttggcgccgggtatggtgggtcgtcctgggcctgctgggccccctgggcaacct
ggtgctgctggctctataggacatccaggcacccgtgggccaccaggctacagaggtctg
ccaggagacctgggtgaccctggtcccagaggtgacgttggtgaaccaggagacaaagga
ccgattggcaaggcaattgaaggtcccagcggagaccaaggccatcaaggtctgcccgga
gtgcttggaattgtcaaacacgggcgtgatggtgcccctggagacccaggtgagcctggg
gaagcaggccgagcgggcagcactgggcaccagggatcacctggaatctgtgacacatca
gcttgccagggagcatcgattgctgggaagtcttccaatcccaagaaccattaa
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