Anguilla rostrata (American eel): 135235039
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Entry
135235039 CDS
T10705
Name
(RefSeq) polyadenylate-binding protein 1-A-like
KO
K13126
polyadenylate-binding protein
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03015
mRNA surveillance pathway
arot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135235039
09123 Folding, sorting and degradation
03018 RNA degradation
135235039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135235039
03041 Spliceosome [BR:
arot03041
]
135235039
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135235039
mRNA cycle factors
Stress granule specific factors
135235039
Spliceosome [BR:
arot03041
]
Complex C
Other components
Complex C specific factors
135235039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_10
RRM_occluded
RRM_3
RBD_RDR6
ApbA_C
Motif
Other DBs
NCBI-GeneID:
135235039
NCBI-ProteinID:
XP_064156308
LinkDB
All DBs
Position
11:1718267..1727357
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AA seq
680 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGEDFDDEKLKEIFSEFGRTLSVRVMMDERGRSRGFGFVNYEN
HEDAQKAVEQMNGKELNGRILYVGRAQKRLERQGELKRKFEQIKQERIHRYQGVNLYVKN
LDDGIDDERLRREFAPYGTITSAKVMTDVGHSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERKAILTNQYMQRLASVRALPAPVIGSYQQPSGYFMSTVPQVGQGALY
PPNCSPILPALWTTQPPRPQGPYSAQFVRSAVPRRASTPISSVRQASTQAPRVMSNTQKM
GELCGSGSVPVQFGSGLGLAQVRSGPGLAWVWLRSGLSPAWVRFRSVRPSVPPCLVWSSS
LWGAYIQSGTMWVPMHQVTGPGVTSVPHGVRNAAGITVQPVTVQQVSEPAVLVRGQEPLT
ASMLAAAPLMEQKQLLGERLYPLIQALHPSLAGKITGMLLEIDNSELLHMLEARESLHSK
VDEAVAVLQAHQAKELSPKN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtagcggccccgcctacccgctggcctcgctgtacgtcggggacttgcaccct
gacgtcaccgaggccatgctgtaccagaagttctccccagccggcccaatcatgtccatc
cgcgtttgccgtgacatcatcacgcggaggtcgctgggatacgcctacatcaatttccag
cagcctgctgacgcggaatgtgccttggacacaatgaactatgaggtcatcaagggtcga
ccaatcaggataatgtggtcccagcgtgaccccggactgaggaagtctggggttggaaac
atcttcataaagaacatggacgagtccattgataacaaggccttgtacgacaccttttcc
gccttcggaaacatcctgtcctgcaaggtggtgtgtgatgagaacggctccaagggctat
ggatttgtccacttcgagacccaggaggcagccaaccgagccatagacaccatgaacggc
atgctgctgaacgaccgcaaagtttttgttggccacttcaaatctcgtaaggagagggag
gcagagtttggcgccaaggccatggagttcaccaacgtctacatcaagaactttggcgag
gactttgatgatgagaagctgaaggagatcttctctgaatttggaaggaccctcagcgtg
cgcgtgatgatggatgagcgagggcggtcccgcgggtttggctttgtgaactatgagaac
cacgaggacgcacagaaggcggtggagcagatgaacggtaaagagctgaacggcaggatc
ctgtacgtgggccgagcccagaagaggctggagagacagggcgagctcaagcgcaagttt
gagcagatcaaacaggagaggatccaccgataccagggggttaatctgtatgtgaagaac
ctggacgatggaatcgatgatgagagactgcgacgggagttcgccccatacggcaccatc
accagcgccaaggtgatgacggacgtcggccacagtaagggcttcggcttcgtgtgcttc
tcgtcgccggaggaggccaccaaggcggtgacggagatgaacgggcgcatcgtggccacc
aagccgctgtacgtggcgctggcgcagcgcaaggaggagcgcaaggccatcctcaccaac
cagtacatgcagcgcctggccagcgtccgcgccctgcccgcgcccgtcatcggctcctac
cagcagccctccggatacttcatgtccaccgtgccgcaggtggggcagggtgccctctac
ccgccgaactgttccccgatcctcccggccctctggactacccagcctcctaggcctcag
ggcccgtactcggctcagtttgtccgctcggccgtcccgcgtcgtgcctccactccgatc
agcagcgtcaggcaggcctccacccaggccccccgcgtcatgagcaacacgcagaagatg
ggtgagctctgtgggtccggctcggttccggtccagttcgggtctggcctgggtctggct
caggttcggtccggtccgggtctggcctgggtctggctcaggtccggtttgagcccagcc
tgggtccggttcaggtccgtccgtccatccgtcccgccctgtttggtttggtcctcttcg
ctctggggtgcttatatccagtcaggcacgatgtgggtccccatgcaccaggtcacgggt
ccaggggtaacatcagtaccccacggggtgaggaatgcagctggtatcacggtgcagccg
gtcactgtgcaacaggtgtcagagccggcggtgctggtgcggggacaggagcctctgaca
gcctccatgctggccgccgcccccctgatggaacagaagcagctgctgggggagcggctg
taccccctgatccaggcgctgcacccctctctggcgggtaagatcaccggcatgctgctg
gagatcgacaactcggagctgctgcacatgctggaggcccgcgagtcgctgcactccaag
gtggatgaggcggtggcggtgttgcaggctcaccaggcgaaagaactctccccgaagaat
tga
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