Anguilla rostrata (American eel): 135235157
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Entry
135235157 CDS
T10705
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135235157
04518 Integrin signaling
135235157
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135235157
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135235157
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135235157
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
135235157
NCBI-ProteinID:
XP_064156464
LinkDB
All DBs
Position
11:1209735..1249782
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTLLLLAATQVLLLAFVKCQEEDDQLAGGCVQDGQRYSDKDVWKPQPCQICVC
DSGTVLCDEVICEEQRDCPNPEIPFGECCPVCPPQQTPPSGPLGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGIRGDRGAKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGMDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGAAG
PIGPRGPPGPSGKAGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGIKGHRGYPGVDG
SKGESGAAGAKGEAGAPGENGAPGPMGPRGLPGERGRPGASGAAGARGNDGLAGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAGGNPGTDGIPG
SKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGDPGIPGFKGEAGPKGELGPAG
PLGAPGPAGEEGKRGARGEPGAAGPNGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVAG
VGGPKGANGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPTGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEAGKAGEKGLVGAPGLRGLSGKDGETGAAGPPGPAGLAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGAVGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGSPGAQGPPGLQGMPGERGASGISGPKGDRGDNGEKGPEG
APGKDGSRGLTGPIGPPGPAGPNGLKGESGPSGPTGAAGARGAPGDRGETGPPGPAGFAG
PPGADGQPGAKGELGEGGQKGDAGAPGPQGPSGAPGPQGPTGVFGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPGEKG
EPGEDGPPGPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGGAGDRG
PPGPVGPPGLTGPSGEPGREGTPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGGPG
PVGPTGKQGDRGESGAQGPSGPPGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTG
LQGLPGPPGSPGDQGAAGPAGPSGAKGPPGPVGPGGKDGANGIPGPLGPPGPRGRSGETG
PSGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRQHDAEVDA
TLKSLNSQIENIRSPEGSKKNPARTCRDLKLCHPEWKSGEYWIDPNQGCTVDAIKVFCNM
ETGETCVQPRPASIPRKNWWSSKGKERKHIYFGETMNGGYSFSYGDDSMAPNTASIQMTF
LRLLSTEGSQSLTYHCRNSVAYMDQASGNLKKALLLQGSNDVELRAEGSSRFTYSVLEDG
CTKHTGQWGKTVIEYKTQKTSRLPIVDIAPLDIGGADQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattccaggacgcttctgctactcgcagcaacgcaagtcctttta
ttagcctttgtcaaatgccaggaagaggatgaccagctggcgggcggctgcgtgcaggac
ggccagcgctatagcgataaggacgtgtggaagccgcagccgtgtcagatctgcgtgtgc
gacagcgggaccgtcctgtgcgacgaggtcatctgcgaggagcagagagactgccccaac
cccgagatcccattcggagagtgctgccccgtctgccccccccagcagacccccccctcg
ggaccacttggtgctaagggacagaaaggagagccaggagacatcacagacgtcgtagga
ccacgtggaccagcaggccccatgggccccccaggagagcagggcattcgcggagacaga
ggtgcaaagggggagaagggaagtcttggcccccgaggaagagatggagagcccggtacc
cctggaaaccctggaccccccggacccccaggacccaacggaccgccaggactcggagga
aactttgctgcacagatggcgggtggaatggacgagaaggctggaggcgcacagatgggg
gtgatgcagggaccgatgggccctatgggtccccgtggtccacctggccccagcggagca
cctggtccacaaggtttccaaggcaaccccggggagaccggagaacctggcgcagctggc
cccatcggcccccgcggcccccccggaccctctggaaaagcaggagatgacggtgaagct
ggaaagccgggtaaagccggagagcgaggaccacctgggcctcagggtgcacgcggtttc
cctgggacacccggacttcctgggatcaagggacacaggggctacccaggtgtggatgga
tcgaagggagagtctggagctgcaggagctaagggtgaggcaggtgctcccggtgagaac
ggcgcccccggaccaatgggcccacgaggtctgcctggtgagagaggtcgtcctggagcc
tcaggagccgctggtgctcgtggaaatgatggtttggctggccctgctggtcctcccgga
cctgttggacctgctggggctcctggtttcccaggttctccaggtgctaagggtgaggca
ggtcccacaggagctcgtgggcctgaaggtgcacaaggaccccgaggagagtctggaacc
cctggatccccaggcccagccggtgctgggggtaaccctggtactgatggcattcctgga
tccaaaggatctgcgggcggtcctggtattgcaggtgctcctggtttccccggtccccgg
ggcccccccggacctcagggagccacaggccctctggggcccaaaggacagcagggtgac
cccggtatcccagggttcaaaggtgaagctggacccaaaggagagcttggccctgcaggt
cccctgggagccccagggccagcgggagaggaggggaagcgaggagccagaggagagcct
ggcgctgccgggccgaacggacctcccggtgagaggggcgctcccggtaaccgtggtttc
ccaggtcaagatgggctggctggtcctaagggtgcccctggtgagcgaggggttgcaggt
gttggaggacccaagggagccaacggagacccaggtcgtactggggagccaggcctgcca
ggtgctaggggtctcactggtcgccctggtgacgctggtcctcaaggcaaagttggtcct
actggcgctgctggcgaggatggtcgccccggaccacctggtccacagggagcccgcggg
cagcctggagtcatgggattcccaggacctaagggagccaacggagaggctggtaaagct
ggagagaagggccttgtgggagcaccaggcctgaggggtctgtcaggtaaagatggagaa
actggagcggcaggacctcctggaccagctggacttgcaggagagagaggggaacagggc
cagcctggtccctctggattccagggtctacctggacctccaggccccccaggtgaagga
ggaaagcctggtgaccagggtgtcccaggagagggtggtgccgctggtgctgttggaccc
agaggcgagcgaggtttccctggagagagaggtggcgctggaccccaaggccttcaggga
ccacgtggtctccctgggactccagggaccgacggacccaagggtgccatcgggccaggt
ggtagcccaggggcgcaggggccccccggtctgcagggcatgcccggggagaggggcgcc
tccggaatctcaggacccaagggcgacagaggcgacaacggcgagaaaggacctgaggga
gcgcctgggaaggacggctcaagaggtttgacaggtcccattggccctccaggtccagcc
ggtcctaatggactgaagggtgaatctggaccttcaggcccaactggtgctgctggtgca
cgtggagctcctggcgaccgtggtgagaccggaccccccgggcctgctgggttcgctgga
ccccctggtgctgacggccagccgggagccaagggcgagctcggagagggaggacagaaa
ggagacgctggagcacctggcccccagggcccctccggagcccccggtccacagggcccc
accggcgtcttcggacccaaaggcgcacgcggtgctcaaggcgctcctggtgccactggt
ttcccaggtgctgctggcagagtcggacctcccggccccaacggtaaccccggtgctgca
ggccctgctggtcctgcggggaaggatgggcctaaaggagtgcgtggagacggcggtcct
cctggtcgccaaggagacgctggactgcgtggggctgccggagccccaggagagaaggga
gagccaggcgaggatggacccccaggtccagacggcccctcaggacctcagggtttggcc
ggatctcgcggtattgtgggtctgccgggacagcgtggagagagggggttccctggcctt
ccgggaccttctggtgaaccaggcaaacagggaggtccaggtggggcgggcgaccgagga
ccccctgggcctgtggggccccctggcctgactggaccatcaggggaacctggcagagag
ggcacccctggatccgatggacctcccggcagagatggagctactgggatcaagggcgac
cgtggtaacacaggacctgctggggctccaggagctccgggggcccctgggggcccggga
cccgtaggccccaccggcaaacagggagacagaggagagtctggcgctcaaggaccctca
gggcctccaggtcccgctggagccagaggcatggctggacctcaagggccacgtggagac
aagggtgaggcgggcgagacaggcgagcgagggcagaagggtcatcggggtttcactggc
ctgcagggtctgccaggacctcccggttcccctggtgaccagggtgctgctggacctgcc
ggcccaagtggagctaaggggccccctgggccagtgggccccggtgggaaggatggtgcg
aacggcattcctggaccccttggaccccccgggcctcgcggtcgctctggagaaactgga
ccttctggtcctcctggtaaccccggcccccctggaccgcctggccccccaggccccggg
atcgacatgtcggccttcgctggcctgtcccagccggagaagtccccggaccccctgcgc
tacatgagggccgaccaggcttccggaaacctccgccagcacgacgccgaggtggacgcc
accctcaagtccctcaacagccagatcgagaacatccgcagccccgagggctccaagaag
aaccccgcccgcacctgcagggacctcaaactctgccatcccgagtggaagagcggtgaa
tactggatcgatcctaaccagggctgcacagttgatgccatcaaggtcttctgcaacatg
gagactggagagacctgcgtccagcccaggcccgctagcatcccgcgcaagaactggtgg
tccagcaagggcaaggagcgcaagcacatctatttcggagagactatgaacggaggctac
agcttcagctacggcgatgacagcatggctcccaacacggccagtattcagatgaccttc
ctccgcctgctgtccacagagggctcccagagcctcacctaccactgccgcaacagcgtg
gcctacatggaccaggccagcggcaacctgaagaaggccctgctgctgcagggctccaac
gacgtggagctgcgcgccgagggcagcagccgcttcacctacagcgtgctggaggacggc
tgcacgaagcacacgggccagtggggcaagacggtgatcgagtacaaaacgcagaagacg
tcccgcctccccatcgtggacatcgcacccctggacatcggaggggcggaccaggagttc
ggcgtggacatcggccccgtctgcttcttgtaa
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