Anguilla rostrata (American eel): 135240472
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Entry
135240472 CDS
T10705
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135240472 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arot03041
]
135240472 (prpf40a)
Spliceosome [BR:
arot03041
]
Complex A
U1 snRNP components
U1 related factors
135240472 (prpf40a)
Complex B
135240472 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
Motif
Other DBs
NCBI-GeneID:
135240472
NCBI-ProteinID:
XP_064166029
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Position
15:complement(7697527..7717811)
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AA seq
922 aa
AA seq
DB search
MSSTDGSNGPNQAAPFPVVPPSGMPPPFMGPPGMPPHFPPMGMPPMGQRPPNMAPMPPAM
IPPMMPPMGGPPMGQMPGMMPPMMPGMMMPPRMPAGPMQPTGPPGVSPVDTSATVAPGTM
LSTPTGGSPQDDQPKKKSVWTEHKSLEGKTYYYNTETKQSTWEKPDDLKSPAEQLLSKCP
WKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEESGTPDPAAAAVAAAAAAAAA
AAAASAAAAVATATTVTAAPTAQPEAVVAMTTASEAETAAPAVAEEQLTQAPVQVAEVTA
DTPVNSAEDTPSMEAPPGEAPKKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNAS
WEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETYQRFLENH
EKMTSTTRYKKAEQMFGELEVWSIVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEAL
KNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRTLEKEEED
EKQKSLLRERRRHRKNREAFQKFLDELHDHGQLHSMSAWMEMYPTISSDIRFANMLGQAV
YADSSIGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGLTVEVNTAFEEFGTAISSDK
RATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPESTW
EGVRERFLKESAFEDVTLESERKRIFKDFIHVLEHECQHHHSKNKKHSKKSKKHHRKRSR
SRSGSESEDDDYHSKKKKRSQSKSPSERSSSGESERSYKKSKKHKKKAKKRRHKSASPES
EGERDKKGRDRDRDREREKEKEREKEKENDRSRGKPRSESKQKSPKRKPGKEEDGWDTSG
SELSEGELEKRRRTLLEQLDAP
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgacagatggtagcaatggcccgaaccaagccgctcctttcccagttgtccca
ccttcagggatgccaccaccctttatgggaccgccaggaatgccgcctcatttcccgccc
atggggatgccgccgatgggacagaggcctccgaacatggcccccatgccgccggcgatg
atcccgcccatgatgccgccgatgggcgggcctccgatgggacagatgccaggcatgatg
ccaccgatgatgcccgggatgatgatgccaccccgcatgccagctgggccgatgcagccg
acgggaccgcctggtgtaagcccagtggacacttctgccacggtggcaccgggaacaatg
ctcagcactccgactggcggctcccctcaggatgaccagcctaagaagaagtcggtgtgg
acggagcacaagtcattggaggggaagacgtactactacaacacagagaccaagcagtcc
acctgggagaagccggacgacctgaagtccccagcagagcaactgctgtcaaaatgtccc
tggaaggaatataaatcggacacgggaaagccgtactactacaactctcaaaccaaggag
tcccgctggaccaaacctaaagagctggaagatctagaagctatgataaaggctgaagag
tctgggacacctgatccagctgcagctgctgttgctgcggcggcggctgctgctgccgcc
gccgccgccgcctctgctgccgccgccgttgccacggccaccacggtcaccgccgcaccc
accgcgcagccggaggccgtcgtcgccatgacgacggcgtccgaggcggagacagccgcc
ccggccgtcgccgaggagcagctgacccaagcgcccgtccaggtggccgaggtcacggcg
gacacgcccgtcaactccgccgaggacacgcccagcatggaggccccgcccggggaggcc
cctaagaaggaggagcggccagagctggtgaagaaggtctacaagtggaacaccaaggag
gaggccaagcaggccttcaaggagctcctgaaggagaagggcgtgtcatccaatgcctcg
tgggaacaggccatgaaaatgatcatcaatgacccacgctacagcgcgctacctaaactg
agcgagaagaagcaggccttcaacgcatacaaggtccagacggaaaaggaagagaaggag
gaggccaggattaagtacaaggagtccaaagagacctatcagcgcttcctggagaaccac
gagaagatgacctccaccaccagatacaagaaagcagagcagatgttcggcgagctggag
gtgtggagcatcgttcctgagcgggaccgtctggagatctacgaggacgtcttgttttac
ctggccaagaaggagaaggaacaagccaagcagctgaggaagaggaactgggaagcgctg
aagaacattctggacaacatggccaacgtgacgtaccgcaccacctggtccgaggcgcag
cagtacctgctggacaaccccacgttcgccgaggatgaggagttgcagaatatggacaag
gaggacgcgctgatctgcttcgaggagcacatccgcaccctggagaaggaggaggaggac
gagaagcagaagtccctcctgcgggagaggcgcaggcatcgcaagaaccgggaggccttc
cagaaattcctggacgagctgcacgaccacgggcagctccattccatgtcggcctggatg
gagatgtaccccaccatcagctccgacatccgcttcgccaacatgctgggccaggcggtt
tatgccgactcttctataggctccacccctctggacctgtttaagttctacgtggaggac
ctgaaggcgcgctaccacgacgagaagagaatcatcaaggacatcctgaaggataagggc
ctcactgtggaggtgaacaccgcttttgaggagtttggcacagcgatcagctccgataaa
agagccacaacgctggacgccggcaacatcaagctggccttcaacagcttactggagaaa
gccgaggcgcgggagagagagcgagagaaggaggaggccaggaagatgaagaggaaagag
gccgccttcaagagcatgctgaagcaggccaccccgcccctcgaacccgagtccacctgg
gagggagtgcgggagagattcctgaaggaatccgcctttgaggacgtcactctggagtcg
gaaaggaagaggatcttcaaggacttcattcatgttttggagcacgagtgccaacaccat
cattctaagaacaagaagcattcaaagaaatccaagaaacatcacagaaagaggtcccga
tctcgctcgggctccgagtctgaagacgatgactaccactcaaagaagaagaagcggtcg
cagtccaagtccccgtcagagcgctcctccagcggtgaatccgagagaagctacaagaaa
tcaaagaagcacaagaagaaggccaagaaaaggcgacacaagtcggcctcccccgagtcc
gagggcgagagggacaagaagggcagggaccgcgacagagaccgggagagggagaaggag
aaggagcgggagaaggagaaggagaacgaccggtccagggggaaacctcgctccgagtcc
aagcagaagtctcccaagagaaagccggggaaggaggaggacggctgggacacctcgggg
agcgagctgagcgagggggagctggagaagaggaggaggaccctgctggagcagctggac
gcgccctga
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