Anguilla rostrata (American eel): 135241304
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Entry
135241304 CDS
T10705
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135241304
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135241304
09142 Cell motility
04820 Cytoskeleton in muscle cells
135241304
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135241304
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135241304
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135241304
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135241304
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135241304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135241304
NCBI-ProteinID:
XP_064167631
LinkDB
All DBs
Position
15:complement(30377544..30436671)
Genome browser
AA seq
1674 aa
AA seq
DB search
MKFEVRKVGVMQFQHRVDLKNMRFLILSLAVCFLLTSEVHAGGKSHSGPCGGRDCSGACK
CFPEKGSRGQPGPLGPQGPRGPPGRPGEVGVHGPKGEKGDSGQGGITGPKGAVGLTGVPG
FAGADGIPGHPGQAGSRGKPGADGCNGTQGESGLPGQPGGLGRPGDPGQHGRKGQKGESL
EVRVFMEKFRGDPGDSGLPGLPGPVGLPGLMGFRGYPGPQGPPGYPGPPGQKGAMTVVIK
GVKGELGEAGEPGPPGNDTYPHTSVTTGLPGRKGEKGLKGETGDLADNKGEDGIMGFPGL
RGTSGLDGEPGGKGDIGEPGPQGRDGPKGEVGEPGEVIYYGGRHGEGPPGPAGQPGRKGE
RGEQGDKGLPGPPGLPAISSGQAVVNISPFGPKGEKGLKGLQGEPGPPAQHPGRPGFDGF
PGTPGPPGPKGSFLLYRGRGQPGPAGRPGLKGDAGLCECSISDSPPGAPGPAGAQGRPGM
TGEWGQQGDQGLPGRKGIPGLPGFPGVKGAPGPKGRKGDTWVITEKGQSGDPGDPGLDGG
MGDRGRPGFSGRPGAAGLRGPQGEGPVGAPGEKGFPGAPGLPGKTGLAGDPGRVMSAEKG
RRGLAGDPGFDGSVGFPGLPGAPGGCVLEGSGEQTDAEGECDPVPGQPGDPGFPGISGID
GFAGVPGFKGELGLTGEGGSKGERGEPGRGGAPGPPGFVGPRGDKGQPGNKGVDGPPGLP
GQQGRDGEEGQKGAHGLVFGAAPGPPGDVGPPGLQGTWGPRGEIGNQGYHGMPGMPGILG
PKGDRGPPGLQGEIGRPGPEGKYGFPGVPGPPGPPGPQGIIGSPGFPGDRGIQGDPGPPG
PSGMKGTPGDPGDLGLKGREGLPGDPGEPGPVGFPGVPGLRGSKGSPGMAGFTGVKGVKG
FSGVPGVKGEPGFPGVAGVKGGMGWPGEKGDRGIDGPQGEKPFVPPKMILEMKGVKGDLG
IPGQPGFTGPYGPTGLPGLPGRTGSDGLPGDPSEDKGALGDPGPVGLPGPKGMPGPTGPP
GISGFPGMAGSTGEKGSPGAYGQSGDPGLKGKKGEAGAVIDLPGSTGLRGEFGPPGFPGG
KGSTGQPGDRGSPGFHGIEGMKAESGDPGSDGRPGFEGKRGSPGDQGQKGFPGTPGQTGA
DGFPGTPGHRGFPGLKGIFGLHGLKGQKGFPGTPGLDNWGAPGEPGGKGERGETGISSTQ
SGLPGSPGLKGSGGDPGDPGQPGAPGFQGPQGLPGEPGRLGAIGDPGSKGPKGYQGSPGV
RGSPGIPSPFGDKGEKGLSGIFGQVGLKGLLGDQGQPGVQGQHGVSGKKGVKGEQGLMGV
PGRAGVQGDRGPVGPKGNSGPPGFPGAPGAQGEAPKPPKHLGERGPPGPQGIRGPDGVYG
ENGPQGPPGDPGLFGPKGQKGMPGIGGTPGVPGYRGEGGQRGHQGLEGLEGNPGRPGTPG
IPGMAGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSC
LPRFNTMPFIYCNPGDLCYYASRNDKSYWLSTTAPIPMMPVVEDEIQPYISRCSVCEAPS
VAIAVHSQDVTIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIE
CNGAKGTCHYFANEHSFWLTSIDQSFQSSPEMETLKAGQLLSRISRCQVCMKNL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaggttcgaaaagtcggggtgatgcagtttcaacacagggtagacctgaaa
aacatgaggtttctgatactctccctggccgtctgctttctgctgacgtcggaagtgcac
gcgggtggtaagagccacagcggaccgtgcggagggagagactgcagcggggcgtgtaaa
tgcttccctgagaaaggttcacggggccagcccgggccgctcgggccccagggtccccgg
ggccccccggggcgcccgggtgaggtgggggttcacggccccaaaggagagaagggggac
tcggggcagggtggcatcactggacccaaaggcgcggtgggattgactggcgttcctggg
ttcgctggagcagacggaattcctggccaccctggacaagcgggctctcgtggaaaaccg
ggcgccgacggctgcaacggaactcagggagagtcggggttgccagggcaaccaggtggt
ctgggccgtccaggtgacccggggcagcatgggagaaagggacagaagggggaatccctg
gaggtcagagtgttcatggagaaatttcggggggatccaggtgactctggcttgccggga
ttacctgggcctgtcggtctcccaggtttgatgggctttagaggctatcctgggccacag
ggcccccctggatatccaggcccacctggacaaaagggtgccatgactgtcgtaataaag
ggagtcaaaggagagctgggggaggctggtgagcctggccccccggggaacgacacctac
ccccacacatccgtgacaacaggacttcctggcaggaaaggagaaaagggtttaaagggt
gaaactggagatttggccgataacaagggggaggatgggattatggggtttcccgggctg
cggggaacctcaggtctggacggggaaccgggagggaagggcgatatcggtgaaccagga
ccacaaggaagagacggacccaagggtgaggtaggagaaccaggagaagtgatatattat
ggaggcagacatggagagggaccacctggaccggccggccagcccggccgcaagggagag
aggggtgagcagggtgacaagggtcttccaggaccccctggacttccagcaatctcctct
ggtcaggcagtggtcaacatcagcccatttgggccgaagggggagaaggggctgaagggt
ctgcagggcgaaccggggccccccgctcagcaccctggacggcctggttttgatgggttt
ccaggcaccccagggccgcccgggcccaaaggatcgtttttactgtataggggaagaggg
cagccaggccccgctgggcggccgggactcaaaggcgatgcaggactgtgtgagtgcagc
atcagcgactctccccctggggctccgggtccggcaggcgcacagggccgccccggaatg
acgggcgagtgggggcagcagggcgaccagggcctccctggacgcaaggggatacctggg
ttacccggttttccaggggtaaagggcgctcccggtcccaaagggagaaaaggagacacc
tgggtgatcaccgagaaaggacaatctggagacccaggagaccctggactagatggaggc
atgggtgacagaggccggcctgggttttcgggacgtccaggggccgctggactgcgtggc
ccccagggggaagggccggtgggcgctccaggggagaaggggttccccggggcaccgggc
ttgcctgggaagacgggcctggcgggagacccgggccgggtgatgagtgcagagaagggg
cgccgtggtctcgctggcgatcccgggttcgatggttcggttggcttccctggactccct
ggggctccaggaggctgtgttctggaaggttctggagagcagacagatgctgaaggagaa
tgtgatccagtgccaggtcaaccaggtgatccgggattccctggaatttctgggattgat
ggtttcgcaggtgtgccaggttttaaaggggagctaggattaaccggggaggggggatcc
aagggggagcgaggagaaccaggcagaggaggggccccaggaccacccggttttgttggg
ccgcgtggcgataagggtcagcctggcaataaaggggtagacgggcccccaggtctcccc
gggcagcagggtagggatggggaggaggggcagaagggggctcacgggctggtctttggg
gcggcccctggacccccaggagatgtgggccctcctggactccaaggcacctggggcccc
agaggggagattggtaaccagggataccacggaatgccaggcatgcctggtatcctcgga
cccaaaggtgatcggggtcctccaggcctgcagggggagatagggagacctggaccagaa
ggaaagtatggattcccaggggtcccaggtccacctggccccccagggccccaagggatc
attggtagcccaggatttcctggagacagaggaattcagggtgacccaggcccacctggg
ccttctgggatgaaaggcacacctggagatccaggtgatctcggtctaaagggcagagaa
ggccttccaggtgacccaggagagccaggtcccgtgggctttcctggagttcctggactg
cgaggttcaaaaggctcgccaggaatggcgggctttactggggtgaaaggtgtaaagggt
ttctccggagttccgggcgtgaagggggagccgggttttccgggggtcgcgggagtgaaa
ggcggaatgggatggcctggagaaaagggtgaccgcgggatcgacgggcctcagggtgaa
aagccgttcgtcccacccaagatgatcctggagatgaagggggtcaagggcgacctcgga
ataccgggacagccgggattcaccggcccctatgggcccacagggttaccaggcctgccg
ggacgaacgggcagtgatggcctaccgggggaccccagcgaggataagggggctttgggt
gatccagggcctgtggggcttccgggacctaaagggatgccgggacccaccggcccaccg
gggatctcaggctttccggggatggccggttcgacgggagagaagggcagtcctggagcc
tacggccagagcggagaccctggactgaagggaaagaaaggtgaggcgggtgcagtgatc
gacttaccgggctccacgggccttagaggggagtttggaccccctggatttccaggaggt
aaggggtccactgggcagcccggagaccgcggcagtcctggtttccatggcatcgagggc
atgaaagcggagagtggagaccctggctctgacgggcgcccaggctttgaggggaaaagg
ggctctccaggagaccaggggcagaaaggctttcccggaacgccgggacaaacgggagca
gacggatttcctggcacgccagggcacagaggttttcctggtctgaagggaatatttgga
ctgcatggcctgaagggccagaagggattccctggaacaccaggtttggataactggggg
gccccaggtgagcctgggggtaaaggagagaggggagaaaccggaatctccagcacacag
tccggactgccagggtcaccagggctcaagggctctggtggagatccaggtgacccaggc
cagccaggagctcccggatttcaaggaccccagggcctgcccggagagcctggccgcctg
ggtgccattggagaccctggatcaaagggaccgaaaggatatcaagggtcccccggggtg
agggggagtcctggaattccctcaccgtttggagacaagggagagaaaggcctgtccggt
atatttgggcaggtgggcctgaagggactcctgggggatcagggtcaaccaggcgtacaa
ggacagcatggagtgtctgggaagaaaggtgtgaagggggagcaggggctgatgggagtt
cctggaagggcgggtgtccaaggagacaggggacctgtaggtccaaagggaaactccggg
cctccaggtttccctggagccccaggtgctcaaggtgaggcccccaagcctcccaaacat
ttgggggagagaggaccaccaggtccacagggaattcgggggcctgacggtgtttatgga
gaaaatggcccccagggtccgcctggtgacccaggattatttggccccaaggggcagaag
ggcatgccaggaatcggcggaaccccaggggtgcctggttaccgtggcgagggcggacag
aggggccaccagggccttgagggcctcgaaggtaatccaggtcgcccaggtacccccggg
atccctggcatggcggggcgcagcgtgagcgtggggtacctgctggtgaagcacagccaa
tcagagcagacgcccatgtgccctgtgggcatgtccaagctgtgggacgggtacagcctg
ctctacctggagggccaggagaaggcacacaaccaggacctgggcctggctggatcttgc
ctccctcgtttcaacacaatgcccttcatctactgcaaccctggcgacctttgctactac
gccagccgcaacgacaaatcctattggctgtctaccaccgcccccattcccatgatgcct
gtggtggaagacgagatccagccctacatcagccgctgctccgtgtgtgaggcgccctct
gtggccatcgcggtgcacagccaggacgtcactatcccacaatgccctgcgggctggcgg
agtctttggattggctactccttcctcatgcacacagcggcaggtgatgaaggagggggt
cagtcgctggtgtcgcccggctcctgcctggaggacttccgcaccacgcccttcatcgag
tgcaacggcgccaaggggacctgccactacttcgccaacgagcacagcttctggctgacc
tccatcgaccagtccttccagagctccccggaaatggagaccctgaaggctgggcagctc
ctgtcccggatcagccgctgccaggtgtgcatgaagaacctgtga
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