Anguilla rostrata (American eel): 135241601
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Entry
135241601 CDS
T10705
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03420
Nucleotide excision repair
arot04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135241601 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
135241601 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
arot04121
]
135241601 (ddb1)
03400 DNA repair and recombination proteins [BR:
arot03400
]
135241601 (ddb1)
Ubiquitin system [BR:
arot04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
135241601 (ddb1)
DNA repair and recombination proteins [BR:
arot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
135241601 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
135241601 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
135241601
NCBI-ProteinID:
XP_064168190
LinkDB
All DBs
Position
16:5714942..5748057
Genome browser
AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQVPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVTHQQLIQITSGSVRLVM
QETKALVSEWKEPQGRNISVAACNSTQVVLAVGRVLYYLEIHRGELKQISFTEMEHEVAC
LDITPLGEGGESPLCAVGLWTDISARILKLPSFSALHKEMLGGEIIPRSILMTTFEGSHY
LLCALGDGALFYFGLDLQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESP
RRICYQEMSQCFGVLSSRVEMQDASGATAAVRPSASTQALSSSVSSSKLFPSSTSPHETS
FGEEVEVHSLLVVDQHTFEVLHAHQFLQSEYALSMVSCRLGRDPSVYFVVGTAMVYPEEA
EPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD
DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFSHGSLVLQNLGESS
TPTQGSVLFGTVNGMIGLVTSLSEGWYSLLMDLQNRLNKVIKSVGKIEHSFWRSFHTERK
TEQATGFIDGDLIESFLDLGRAKMQEVVSSLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcttataattacgtggtcaccgcacagaagccgacggccgtcaatgcctgcattact
gggcacttcacctccgcggaggacctcaacctcctcatcgccaagaacacccggctggag
atctacgtggtgacggccgaggggcttcggccggtcaaggaggtggggatgtacggcaag
atcgccgtcatggaactcttccggccgaagggcgagagcaaagacctgctgttcatcctg
acggccaagtacaacgcctgcatcctggagtacaagcagagcggggagagcatcgacatc
atcacccgcgcccacggcaacgtgcaggatcggattggccggccctcagagacggggatc
attggcatcgtggacccggagtgccgcatgattggcctacggctgtacgacggtcttttt
aaggtcatccccctggaccgagagaaccgcgagctcaaggccttcaatatccggctagag
gagcttcaggtcatcgacgtccacttcctctatggctgccaggtccccacagtgtgcttc
atttaccaggatccccagggcaggcacgtgaagacgtacgaagtgtcgctccgcgagaaa
gagttcaacaagggcccctggaagcaggagaacgtggaggccgaggcgtccatggtcatc
ccagtgccagagccatttgggggagccataatcatcgggcaagagtccatcacctaccac
aacggagacaaatatttggccatagcgccccccaccatcaagcaaagcactattgtgtgc
cataaccgcgtggaccctaacggctcccgctacctgctgggggacatggagggccggctc
ttcatgctgctcctggagaaggaggagctgatggacggagccgtggtgctcaaggacctg
agggtggagctactgggggagacctccattgctgagtgtctcacatacctggacaatggc
gtggttttcgtgggttcccgacttggagattcccagctggtcaagctgaatgtggacagc
aatgatcagggctcgtacgttgccgtgatggagaccttcaccaacctggggcccattgtg
gacatgtgtgtggtggacctggagagacagggccagggacagctggtcacctgctcgggc
gcttttaaggaggggtcgctgagaatcatccgcaacggcatcgggatccacgagcacgcc
agcatcgacctgccggggatcaaaggactgtggcccctgcgctcggaggccggacgggag
accgacgacatgctggtgctttccttcgttggccagacaagggtgctgatgctcagcggt
gaggaagtggaggagacggagctgcctgggtttgtggacaaccagcagaccttctactgc
ggcaacgtgactcaccagcagctcatccagatcacctccggctcggtgcggctggtgatg
caggagaccaaagcgctggtgagcgagtggaaggagccgcaggggaggaacatcagcgtc
gccgcctgcaactccacacaggtggtcctggctgtgggccgcgtgctgtactacctggag
atccaccgaggagagctcaaacagatcagcttcacggagatggagcacgaggtggcctgc
ctggacatcacgcccctcggggagggcggggagtcgcccctgtgcgccgtgggcctgtgg
acggacatctccgcccgcatcctcaaactgccctccttctccgccctgcacaaggagatg
ctgggaggagaaatcatcccccgctccatcctgatgaccacgttcgagggaagccactac
ctgctctgcgccctgggagatggagcgctcttctactttggcctagaccttcagacaggt
gtcctcagcgagcgcaagaaggtcaccctggggacgcagccgacggtcctgcgcacgttc
cgctccctgtccacctccaacgtcttcgcctgctccgaccggcccaccgtcatatactcc
agcaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgcccc
ctcaactccgagggctaccccgacagtctggccctggccaataacagcacactgaccatt
ggaaccatcgatgagatccagaaattgcacattcgcactgtccctctgtacgaatctccc
aggagaatctgttatcaggagatgtctcagtgtttcggggtgctgtccagccgggtggag
atgcaggacgccagcggagccaccgctgccgtccgtcccagtgcgagcacgcaggctctc
tccagcagcgtcagctccagtaagctcttccccagcagcacctccccccacgagacctcc
tttggggaggaggtggaggtccacagcctgctcgtggtggaccagcacaccttcgaagtg
ctccacgctcaccagttcctgcagagcgagtacgctctcagcatggtgtcctgtcgtctg
ggccgggacccctctgtgtacttcgttgttggcacggcgatggtgtaccccgaggaggcg
gagccgaagcagggccgcatcatcgtcttccactacactgatgggaagctgcagacagtg
gctgagaaggaggttaagggagcggtgtactccatggtggagttcaatggcaagctgctg
gctagtatcaacagtactgtgcgcctgtatgagtggacagctgagaaggagctgaggacg
gagtgcaaccactacaacaacatcatggcgctctacctgaagacgaagggagacttcatc
ctggtgggggacctgatgaggtctgtgctgctgctggcctacaagcccatggagggaaac
ttcgaggagattgcgcgcgacttcaaccccaactggatgagcgccgtggagatactggac
gacgacaacttcctcggcgcggagaacgccttcaacctgttcgtgtgccagaaagacagc
gcggcgaccacggacgaggagcggcagcacctgcaggaggtgggcgtgttccacctgggg
gagttcgtcaacgtgttctcccacgggtccctcgtcctccagaacctgggggagagctcc
acccccacccagggctccgtgctgttcgggaccgtcaacggcatgatcggtctggtgact
tcgctgtcagagggctggtacagcctgctgatggacctgcagaacagactcaataaagtt
atcaagagcgtgggcaagatcgagcacagcttctggaggtccttccacacggagcggaag
accgagcaggcgacgggcttcatcgacggggacctgatcgagagcttcctggacctgggc
cgggccaagatgcaggaggtggtgagcagtctgcagatcgacgacggcagcgggatgaag
agggaggccaccgtggacgaggtgatcaagatcgtggaggagctgacccggatccactag
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integrated database retrieval system
