Anguilla rostrata (American eel): 135242849
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Entry
135242849 CDS
T10705
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135242849 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135242849 (xab2)
03041 Spliceosome [BR:
arot03041
]
135242849 (xab2)
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135242849 (xab2)
Spliceosome [BR:
arot03041
]
Complex B
Other components
Prp19-related factors
135242849 (xab2)
Complex C
135242849 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
SNAP
RPN7
TPR_1
ATG1-like_MIT2
DUF4515
Motif
Other DBs
NCBI-GeneID:
135242849
NCBI-ProteinID:
XP_064170179
LinkDB
All DBs
Position
17:25190994..25202345
Genome browser
AA seq
870 aa
AA seq
DB search
MPSLTEKPDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEYKQNGPKSVLNMIYERALKELP
GSYKLWYNYLYVCTCSYKLWYNYLRERRKQVKGRCITEPAYEEINNCHERALVFMHKMPR
IWLDYCQFLVSQCKITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRR
YLKLSPENAEEYIDYLRSVSRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQN
PDKVKSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHLEKARDVYEEAVQTVVTVRD
FTQVFDSYAHTEETVIAAKMETTAEMGQDEEEDVDLELRLARFEQLIARRPLLLNSVLLR
QNPHNVHEWHKRVKLYEGKPRQIINTYTEAVQTVDPMKATGKPNSLWIAFAKFYEENDQL
DDARTIFEKATKVNYKQVDELAGVWCEYGEMELRHENYEQALHILRKATAIPSKKAEYFD
VSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEH
TYFEESFKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKY
AKTIYLLYAKLEEEFGLARHAMAVYERATEAVERTERHHMFNIYIKRAAEIYGVTHTRAI
YQKAIEVLPDEHSREMCQRFADMESKLGEIDRARAIYSYCSQICDPRMTPVFWQTWKEFE
IRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATANATGTVSDLAPGQSGVDDMKM
LEQKAQQLAAEAEQDKPRPKDKILFVRSDTSRSELAELAKQANPDEIDIDDEDDEEEEDG
GEPDEVQLEQKSVPTAVFGGLKQDSDATGC
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctttgacagagaaaccagatgttatatttgaagaggatgacctgccgtacgaa
gaggagatcatccgcaacccgtactccgttaagtgctggatgcgctatatcgagtacaaa
cagaacggccctaagtctgtgctgaacatgatatacgagcgagcactgaaggagctgcct
ggaagttataagctgtggtataattacctgtatgtgtgtacctgcagttataagctgtgg
tataattacctgagggagaggaggaagcaggtgaagggcaggtgcatcacagagcctgcc
tacgaggagatcaacaactgtcatgagagagcgctggtgtttatgcacaagatgcccaga
atctggctggattactgccagttcctggtgtctcagtgcaaaatcacgcggagccggcgc
accttcgaccgtgccctgcgggccctgcccattacccagcatccccgcatctggcccctg
tacctgcggttcgcccgcaacctgcccctccccgagacggccatccgcgtgtaccgccgc
tacctcaagctgtcccccgagaacgcggaggagtacatcgactacctgcggtccgtgagc
cgcctggacgaagcggcggtaaggctggcggccatcgtcaacgacgagagcttcgtgtcc
aaggagggaaagtccaactaccagttgtggcacgagctgtgtgacctgatctcccagaac
ccggacaaggtgaagtctctgaacgtgggggccatcatccgcgggggcctgacgcgcttc
actgaccagctggggaagctctggtgctccctggccgactactacatacggagcggccac
ctggagaaggcgcgggacgtgtacgaagaggcggtccagacggtggtgacggtgcgcgac
ttcactcaggtgttcgacagctacgcccacaccgaagagaccgtgatcgccgccaagatg
gagaccactgctgagatgggccaggacgaggaggaggacgttgacctggagctgcggctg
gcgcgctttgagcagctgattgcgcggcgccccctgctgctgaacagcgtgctgctgcgc
cagaacccccacaacgtccacgagtggcacaagagggtcaagctgtacgagggcaaaccg
cggcagatcatcaacacgtacacagaggctgtgcagacggtggaccccatgaaggccacg
gggaaacccaactccctctggatcgctttcgccaaattctacgaggagaacgatcagctg
gacgatgccaggacgatcttcgagaaggccaccaaggtgaactacaagcaggtggacgag
ctggcgggggtgtggtgcgagtacggcgagatggagctgcgccacgagaactacgagcag
gcgctgcacatcctgaggaaagccaccgccatcccgtccaagaaggccgagtacttcgac
gtctccgagccggtgcagaaccgcgtctacaagtccctgaaggtgtggtccatgctggcc
gacctggaggagagcctgggcacctttcagtccaccaaggcggtgtacgaccgcatcatc
gacctgcgcatcgccacgccccagatcatcatcaactacgccatgttcctggaggagcac
acgtacttcgaggagagcttcaaggcctacgagcgaggcatctccctcttccgctggccc
aacgtctacgacatctggaacacctacctcaccaagttcatcgaccgctacgggggcaag
aagctggagagggcgcgggacctgtttgagcaggccctggacggctgtcccgccaagtac
gccaaaacgatatacctgctgtacgcgaagctggaggaggagtttgggctggcgcggcac
gccatggcggtgtacgagcgggcgacggaggcggtggagcgcacggagaggcaccacatg
ttcaacatctacatcaagagagctgccgagatctacggagtcacgcacacccgagccatt
taccagaaggccatcgaggtgcttccggatgaacactccagagagatgtgccagcgtttt
gctgacatggagagcaaactgggcgagattgaccgggcgagagccatctactcctactgc
tcccagatctgtgaccccaggatgaccccggtgttctggcagacgtggaaggagtttgag
atccggcacgggaacgaggacaccatccgggagatgctgcgcatcaagcgcagcgtgcag
gccacctacaacacgcaggtcaacttcatgtcctcccagatgctcaaggccaccgccaac
gccaccggcacggtgtcagaccttgctccagggcagagtggagttgatgatatgaagatg
ctggaacagaaggctcaacagctggcagccgaggcagagcaggacaagccccgccccaaa
gacaagatcctcttcgtcaggagtgacacctctcgcagtgaactggccgagcttgcaaag
caagctaaccctgacgaaatagacatcgatgacgaagacgacgaggaagaggaggacggt
ggtgaaccggacgaggtgcagctggagcagaagagtgtccccacagctgtgttcggaggt
ctgaagcaggactccgatgccacaggatgctga
DBGET
integrated database retrieval system
