Anguilla rostrata (American eel): 135243414
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Entry
135243414 CDS
T10705
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135243414 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135243414
NCBI-ProteinID:
XP_064171290
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All DBs
Position
2:complement(2666038..2698845)
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AA seq
1781 aa
AA seq
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MDNLTTKKTVTTGGSSGASGNVVTETVTTTTRLTTLPPKGASAAVSSQKTVSSESSGGAV
LVEKKIITVSSSGSSSNATTTSGGLSIGVSAASGEAGGAGGVVTISSGGTTTAGGSTGGG
SARRGSAGIVTVTSATTTGVSTGGGSAEKGIVTVASTTTSGVSTGGGTTGKTIVSVANTT
TSGVSTGGGSTGRGIVTVASTTTSGVSAGGGSTGRGIVTVGTSTTAGGSTGGGSARRGSR
GTIPVVSTSSGGAMATISTGMSGVTSTGFTSTGFSSGGGMGGGLGGGMGGGMGGGVGGGA
GMSTVTMTTATKGSYSSGGSGGQKRTHGSSPSSPSYSPVPAERKMVINRSMGYAESSSET
SSPEYTRKDYGTASSRGRTQTRESEIRARLQSASPSTRWTELDDVKRLLKGSRSCSISPP
RSPTNTLPIPKKKATLERVVTEGSQSGQYEASDLQSIFWSNSNANYGFSNANNMGALQGI
PNNLALSGGAGNAGVNTGGMVYGVMNNLSSAGGGVLTANGVNTNAVYGVPKNTGPAISAP
GISAATVAPSGPMGDDVFLKDYKYVSREKENVPAKKESDVLVSAIDSGKQFRSAPPVSSS
TGSDSLKKDKKVSGSIDGPLSADTFYTSEKMPAKDKAAHAEVRQENGGLDGLCGGGTCCS
WWKWLLALLLTLLLLLGLLIGLIALAEEVKRLKARVDALEGASSAHTSRLSSGVNIIDPL
DSTYVQRTGLARTDNTVDLGTQPGTDSAALQKTVQLLLRNELQSESMRVHLASSIKGERG
EPGPKGDTGSPGPPGVKGDLGSPGGQGPPGLIGHPGQEGPRGPKGSAGEPGPDGPPGQRG
REGPAGPRGEPGPPGVGEKGDRGNAGEPGLLGPPGQPGPLGPKGDGGAQGAPGAPGAPGL
QGFRGDTGPQGPKGEPGSAGPPGVKGEGGEKGPRGPAGEPGQRGPPGPPGEKGPKGSVGL
PGSDGEKGPRGDQGPAGLPGARGPAGPPGDGGNPGSPGLQGPPGIPGNPGTPGQKGDPGE
AGKVINAAGSSSVSIPGPPGSPGPPGPAGPPGLSGPIGPAGIPGQAGPKGSPGEKGEKGP
KGDKGDKGERGDRGERGEPGQPGRTVEGPSAPKYESEPGRPGAAGPPGTPGAAGSPGIPG
PPGPPGPPGPAGPAGPEGPEGRASVGQPGQPGPAGPPGQPGVGAPGPPGERGEPGSFVPN
QGAFFAGPPGPPGTPGPQGPEGQRGEKGYDGQPGQPGLPGSPGPPGEPGREQPGAPGIPG
PPGEPGIGFPGAEGQPGPPGPLGPPGPPGPLGPPGQPGPSGPQGPPGLTGEAGVPGAPGI
PGSSSGGPSRSAPGLPGPPGPPGPPGVPGSGSGSPAENVRQEVVNYLQSEGIRQYLAGPP
GPPGPPGPPGIGSGGPSLDELANRMINYIQNGGISSGTPGPPGPPGPPGTVSMNDIVSLL
QREDVRQFVIGPPGPPGPAGPPGSDNSDYPSFNPQEVAGRVLSLMNEQENERLRGLPGPP
GPPGLPGTPGDISSLLQGLGPEKLSGPPGPPGPPGPPGQTGPPGPTGDSGFGYRLDEIRD
YLQRDGFVGPPGPVGPPGPPGPSGSAGVGRGLVSYAENTGQAFFRAELQEYLSNENTRRF
IMGPPGPPGPRGHKGDRGDPGSRASRVSEALDYPDVALKVTDYIKTQGLLREVVNEGPQR
VHFRHDHGPPGPPGPPGPPGPPGHTQYSGFHGNVTEELVKFVRTNGAIVGPPGRPGQKGE
MGYTGHKGERGETGPPGIRGQKGEKGEASGSVWRKKRHSGV
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggacaacttaacaacaaaaaagacagtaactaccggggggagctctggagcgtctggg
aacgttgtaactgagaccgtaaccaccactactagacttacaactctacctccaaagggc
gccagtgccgccgttagcagtcaaaagactgtgtcctcagaaagttctgggggggcggta
ctagtggagaagaaaatcatcacagtgagcagtagcggcagcagcagcaatgccacaacc
acatctggagggctttctattggagtgtctgctgcctctggagaagcaggaggtgcagga
ggagtcgtaaccatcagctcaggaggcactaccacagcaggaggttctacaggaggaggt
tctgccagaagagggtccgcaggtatcgttactgtcacaagcgcgaccacaacaggagtt
tctacaggaggaggttctgcagaaaaaggcattgttactgtcgcaagcactaccacctca
ggagtttctacaggaggaggtaccacaggaaaaaccatcgtttctgtcgcaaacactacc
acctcaggagtttctacaggaggaggctccacaggaagaggcatcgttactgttgcaagc
actaccacctcaggagtttctgcaggaggaggttccacaggaagaggcatcgttactgtt
ggaacctctaccacagcaggaggttctaccggaggaggttctgccaggaggggctccaga
ggcaccatccccgtcgtgagcacctcctcgggaggcgccatggcaaccatttccacgggc
atgtcgggggtcacctcgacggggttcacctcgacggggttctcgtcaggaggaggcatg
ggaggaggcctggggggaggcatgggaggaggcatgggaggaggcgtcggaggcggcgcg
gggatgagcaccgtaaccatgacgaccgccaccaaggggagctacagctcgggcgggtcg
ggggggcagaagaggacgcacggctcctccccctcctcccccagctactcccctgtcccc
gcggagaggaagatggtgataaaccgctcgatggggtatgcagaaagttccagtgagacc
tcttccccagaatatacgagaaaggactatggcacagcttccagcagggggaggacccag
acccgagagagcgagattagagcaagactgcagagtgcctcaccgtccaccagatggacg
gagctggatgacgtgaagaggctcttgaaggggagccgatcctgcagcatcagccctccc
cgctccccgaccaacaccctgcccatccccaaaaaaaaagccactctggaacgggttgtc
actgaggggagccagtcagggcagtacgaagcctccgacctgcagtctatcttctggagc
aactcgaacgctaactacggcttcagcaacgcgaacaacatgggagcacttcagggaatc
ccgaataacctggctctgtctggaggggctgggaacgccggtgtgaacaccggcggcatg
gtatatggtgttatgaataacctcagttccgccggcggtggtgttctaactgcgaatgga
gtcaacaccaatgcagtgtacggagttccgaagaacaccggccccgcaatcagcgcgccg
ggcatctccgctgcgacagtggctcccagcggtccaatgggtgacgacgtcttcctgaaa
gattacaagtacgtgagccgggagaaggagaacgtcccggccaagaaggagtcggacgtc
ctggtctcggccatcgacagcggcaagcagttccgcagcgcgccgccggtcagcagcagc
accggctcagattccttgaagaaggacaagaaggtgtccggctccattgatggacccctg
agtgcagacaccttctatacatctgagaagatgcctgcaaaagacaaggcagcacatgca
gaggtccgccaggagaatggaggcctggatggtctctgcggaggtgggacctgctgttcc
tggtggaaatggctgttggctctgctcctcaccctgctgctcctcctgggcctcctgatt
ggactcattgcacttgcggaggaggtgaagcggctgaaggcgagggtcgacgccctcgag
ggggcctccagcgcccacacaagtcgcctctcgtcgggcgtcaacatcatcgaccccctg
gactccacgtacgtgcaacgcaccggcctggcgaggacggacaacacggtcgacctgggc
acccagcccggcacggacagtgccgccctgcagaagaccgtccagctgctgctgaggaat
gagcttcaatctgagtctatgagagtacaccttgcctcctcgatcaaaggagagagaggg
gagccgggacctaaaggtgatactggaagtcctggtcctccgggtgttaaaggtgatctg
ggttcaccaggtggtcaaggtcctccaggtcttatcggacaccccgggcaggaagggcca
cgtggaccaaaaggaagtgcaggggaacctggaccggacggcccacctgggcagagaggc
cgagagggaccagcgggaccccgtggagagccaggtcctccaggagttggagagaagggt
gacagaggtaatgctggtgaacctggacttctaggcccacctggacagccaggtccactg
ggacccaaaggtgatggaggtgcccagggtgctccaggcgcacctggtgccccaggttta
caaggtttccgtggagacacaggaccacaaggaccaaaaggtgaaccaggaagtgctggg
ccaccaggagtcaaaggtgaaggtggggagaaaggtccccgaggcccagcaggtgaacca
ggccaaagggggccaccaggaccccccggtgagaaaggacctaaaggatctgtgggtctc
cctggttctgatggagagaaaggccccagaggggaccaaggaccggctgggttgccagga
gccagggggccggctgggcccccaggagacgggggtaacccagggtcacctggacttcaa
ggaccaccaggtattccaggaaaccctgggacacctggccagaaaggtgaccccggtgaa
gctggaaaagtcattaacgcagccggctccagctcagtgtccatccctggtcctcctggc
agtcctggacctcccggtcctgctggaccccctggtttgtctggtcccattggccctgct
ggaattcctggtcaggctggccctaaggggtcccccggtgagaaaggagagaagggaccg
aaaggagacaagggagacaaaggggagaggggcgacaggggcgagaggggcgagcccggt
caacctgggagaaccgtcgaaggaccttctgctcccaaatacgagagtgaacctggccgc
cctggagctgctggacctcctggaacacctggagctgctggatccccaggtattcccggg
ccccccggacccccaggaccccccggaccagcaggaccagcaggaccagagggccctgag
ggaagagcttcagttggccaaccaggtcaacctggtccagcaggtcccccaggacagcca
ggagtcggagcgcccggaccccccggtgaaagaggagagccgggaagctttgtgccaaac
caaggggcattctttgctgggcctcccggtcctccaggcactcctggacctcagggacca
gaggggcaaagaggtgaaaagggatacgatggacagccagggcagcctggtctaccagga
agtcccgggcctcctggtgaacctggcagagagcaacctggtgcacctggtattcctggg
cctcctggtgaacctggaataggattcccaggtgcggaaggacaaccgggacctcctggt
ccattagggccaccgggtcccccaggaccacttgggccgccggggcaaccagggccttca
ggaccccaaggaccaccgggcctcactggtgaagctggggtgccaggtgcacctggaatc
cccggatcttcatcaggtggcccctcgagaagtgctccaggtctacccggccccccaggt
cctcctggtcctccaggcgtcccagggtctggctccggctccccggctgaaaatgtccgc
caggaagttgtgaactatcttcaaagtgaaggcatcaggcagtacctggctggcccccca
gggcctcctggcccacctggacccccagggattggctcaggtgggccgtctctggacgag
ctggccaatcgcatgatcaactacatccagaatggcggtatcagcagcgggaccccaggt
cctcccggcccccccggcccccctggaactgtgtccatgaatgacatcgtctctctgctc
cagagggaagacgtgcggcagtttgtgattggtcctcccggtcctcccggccctgctggt
cctccgggctccgacaatagcgactatccttcctttaacccgcaggaagtggccgggcgt
gtcctgagcctcatgaacgaacaagagaacgagcgcttgcgtggcctcccagggcctcct
gggcccccaggcctacctggcacccctggggacatttccagtttgctccaaggcttagga
cctgagaagctgtctggaccccctggacctccaggaccccctggccccccaggacagact
ggccccccaggacccaccggggacagtggcttcggctacaggctggacgaaattcgggac
tacctgcagcgagatgggttcgttggacccccaggccccgtcgggccccctggtccccct
ggcccgtcggggtccgctggggtggggagaggattggtgtcctacgcagagaacacagga
caggcttttttccgcgctgagctgcaggaatatctcagtaacgagaacacgcgtcggttc
atcatggggcccccgggtcctcctggccctcgcggacacaaaggagatcgaggcgacccc
ggatcccgcgcatcaagggtgtccgaagctctcgactacccagacgtggctctaaaagtg
acggattacatcaagacccagggcctgttgcgggaagtcgtcaatgagggcccccagcga
gtccacttccgccacgaccacgggcccccgggaccccctggaccgccaggaccacctggg
cccccaggacacacgcagtacagcggtttccacggcaacgtgaccgaagagcttgtgaag
ttcgtcagaacgaacggggccatcgtcggtccaccaggaaggccgggacagaaaggagag
atgggatacactggacacaaaggggaaagaggtgaaactggaccacccggaatcagggga
cagaagggtgaaaaaggagaggcgtcggggtcagtttggcggaagaagcggcacagtggt
gtgtaa
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integrated database retrieval system
