Anguilla rostrata (American eel): 135245584
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Entry
135245584 CDS
T10705
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
arot Anguilla rostrata (American eel)
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arot03016
]
135245584 (rtcb)
Enzymes [BR:
arot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135245584 (rtcb)
Transfer RNA biogenesis [BR:
arot03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135245584 (rtcb)
Prokaryotic type
tRNA splicing ligases
135245584 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
135245584
NCBI-ProteinID:
XP_064174774
LinkDB
All DBs
Position
19:complement(12579176..12583676)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIHKNCWRIRKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMSDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIVVNDRQLACARITS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggtcctacaatgacgagctgcagtttctggataaaatccacaagaactgctgg
cgaatacggaaaggatttgttccaaatatgcaggtagaaggagtcttctacgtaaacgat
cctcttgagaaattgatgttcgaggagctgcgaaatgcttgtcgtggcggaggttttgga
ggatttctaccagccatgaagcaaattggaaatgtcgcagccctccccggtatagtgcac
aagtctatcggacttccagatgtccactctggttatgggtttgcgataggaaacatggca
gccttcgacatgagtgatcccacagcagtcgtttctccaggcggcgtgggctttgacatc
aactgcggcgtccggctgctgcggaccaacctggacgagggagacgtgcagccggtgaag
gagcagctggcccaggccctgtttgatcacatccccgtgggggtcgggtccaagggggtc
atacccatgaacgccaaggacctggaggaggcgctggagatgggggtggactggtccctg
agggagggctacgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagagggctgccgcagctgggt
acgctgggagccgggaaccactacgccgagatccaggtggtggacgagatcttcaacgac
tacgccgccaagaagatgggcatcgaccacaaggggcaggtgtgcgtgatgatccacagc
gggagcagaggcctgggccaccaggtggcgacagatgctctggttgccatggagaaggcc
atgaagagagacaagatcgtcgtgaatgacaggcagctggcctgtgctcgcatcacctca
gaggaggggcaggactacctgaagggcatggccgccgccggcaactacgcctgggtcaac
cgctcctccatgaccttcctcacccgacaggccttctccaaagtgttcaccaccacccct
gacgacctggacatgcacgtgatctacgacgtgtctcacaacatcgccaaggtggaggag
cacatggtggacggcaagcagaaaaccctgctggtgcaccgcaagggctccacccgggcc
ttccccccgcaccaccccctcatcgccgtcgactaccagctgactggacagcccgtgctg
attggcggaaccatgggtacctgcagctatgtgctcacagggacagagcagggcatgacc
gagaccttcggcaccacctgccatggagcgggtcgcgctctgtcccgcgccaagtcccgc
aggaacctggacttccaggatgtgctggacaagctggcagacatgggcatcgccatcaga
gtcgcctcgcccaaactggtcatggaggaggctcctgagtcctataaaaacgtgacggac
gtggtggacacttgtcacgacgccgggatcagtaaaaaagccatcaagctgaggcccatc
gctgtgatcaagggctaa
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