Anguilla rostrata (American eel): 135249149
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Entry
135249149 CDS
T10705
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135249149 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135249149 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135249149 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
arot00535
]
135249149 (col9a1a)
Proteoglycans [BR:
arot00535
]
Extracellular matrix (ECM) proteoglycans
Others
135249149 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135249149
NCBI-ProteinID:
XP_064180537
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All DBs
Position
2:28076378..28146878
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AA seq
697 aa
AA seq
DB search
MPPLDITAIMATGTGCRGRLVVLFLQMVLICSAQRGLPGPRGPPGLPGPAGVPGVDGIDG
DRGDDGTDDTTPGPDGDPGQPGSAGLPGEPGADGLTGPAGEVGPDGLIGQKGEPGKIGPR
GPAGVGPDGPPGPPGPAGLPGELGKVGLPGDIGLRGPPGLPGSPGPRGVPGIHDGTTELC
PNACPLGLAGHPGLPGMKGHKGVKGESGEPGKQGHKGEEGDQGDPGEPGAQGPHGLQGIR
GITGMMGPKGEQGPRGNIGNLGTQGVEGALGDQGQRGVVGETGPKGNQGPQGPRGLTGLP
GPKGEGGLPGVDGREGIPGMPGSKGITGKPGAPGEMGVQGLPGLPGAPGPKGVSGEKGNT
GDPGLAGRMGSSGKTGERGEQGEVGPVGQRGGPGERGEQGPSGPPGKPGPRGAKGDLGLP
GHPGPPGLPGMKGDRGVVGQTGPKGEQGDAGAEGTPGDKGEQGDQGEPGVKGATGSPGET
GARGPEGSRGQPGLEGPSGSPGPRGMQGDRGVPGFPGFQGPSGKQPSDQHIKQVCMRVIQ
EQLAQLAASLRRPESGVAGLPGPSGPPGPPGPTGESGFPGHVGARGLPGLKGPPGIIGVK
GLKGDMGDRGDRGPTVRGSKGLPGVPGLPGEPGRPGYGTDGRDGERGPPGVPGIPGIPGP
PGPPGLNGYCDPSSCNLQAVAAPQSAKDSSMKGPDGP
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccttagacattacagcgatcatggctacaggcacaggctgccgtgggcggttg
gttgtgctttttctgcagatggtcttgatttgctcagcccaaagaggtctacctggtccc
cgaggtccccctggtctcccaggacccgcaggcgttcctggagttgatggcatagatgga
gacaggggagacgacggcacagatgacaccactcctggtccagatggggatcctggccaa
cccggatctgcaggactgcctggagagcccggagccgacggcttgactgggcctgcagga
gaggtggggccagatggccttattggccagaaaggcgagcccggtaagattggaccgcgt
ggaccagcgggtgttgggcctgatggaccccctggaccacctggaccagcggggctccca
ggtgaactgggtaaagttggacttcctggagacataggattgagagggccaccggggctt
cccgggtcacctggacccaggggtgttcctgggatacatgatggaactacagaattgtgt
cctaacgcctgcccccttggcctagctggacatcctggtctgccaggtatgaagggccac
aaaggtgtgaaaggtgaatcaggtgagccaggaaaacaaggacacaagggtgaagaaggc
gaccaaggagaccctggagagcctggtgcgcaaggcccacatggtcttcagggaatcagg
ggaattactggaatgatgggcccaaaaggtgaacaggggcctcgaggcaacattggaaac
ctaggtactcaaggtgttgaaggtgcactcggggatcaaggccaaagaggagtggtgggt
gagactggtccaaaggggaaccaaggacctcaagggccaagaggactcacaggtctccct
ggaccgaagggagagggtgggctaccaggagtggatggccgcgaaggaattcctggaatg
ccagggtctaagggcattactgggaaaccaggagctccaggggagatgggggttcaggga
cttcctggtttaccaggtgcacctggcccaaaaggtgtcagtggtgagaagggcaacact
ggtgaccctggccttgctggacggatgggatcctctggtaaaacaggagagcgaggggaa
caaggagaagtaggacctgttggacaaagaggtgggccaggtgaaagaggagagcagggt
cccagtggtcctcctggaaaaccaggccccagaggggctaaaggggaccttgggctgcct
gggcatcctggcccaccaggactgccaggaatgaagggagacaggggtgtggttggtcaa
acaggcccaaaaggtgaacaaggagatgctggagcagagggaacaccaggagacaaagga
gaacaaggtgaccaaggagagcctggagtgaaaggagcaactgggagtcctggagaaact
ggagccaggggaccagagggaagccgcggacagcctgggcttgagggaccttctggcagt
cccggaccccgggggatgcagggagacaggggtgtgcctgggttcccagggttccaggga
ccatcgggtaaacagccaagtgatcagcacatcaagcaagtctgcatgagagtaattcag
gagcagttggcccagttggcagctagtctgaggaggccggagtctggggttgctggtctg
cctggtccatctgggcctcctggtccccctggccccactggagaaagcggcttccctggg
catgttggtgcaagagggttgccagggctcaaaggaccaccaggcatcattggggtcaaa
gggcttaaaggtgatatgggagaccgaggagatagaggaccaacagtacgaggatcaaaa
ggcctacctggagtgcctggcctaccaggtgaacctggaagacctggttatgggacagat
ggccgtgatggtgagagaggtcctcctggtgtgcctggtatccctggaatccctgggcct
ccaggtccacctggtctcaatggctattgtgatccctcatcatgcaatttacaggcagtg
gcagccccacagtctgctaaggacagcagcatgaaagggccagatggcccatga
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