Anguilla rostrata (American eel): 135249283
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Entry
135249283 CDS
T10705
Symbol
slx4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
135249283 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
arot04121
]
135249283 (slx4)
03400 DNA repair and recombination proteins [BR:
arot03400
]
135249283 (slx4)
Ubiquitin system [BR:
arot04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
135249283 (slx4)
DNA repair and recombination proteins [BR:
arot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
135249283 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_DHX34
Motif
Other DBs
NCBI-GeneID:
135249283
NCBI-ProteinID:
XP_064180841
LinkDB
All DBs
Position
2:57904983..57917858
Genome browser
AA seq
1643 aa
AA seq
DB search
MDDSDLDFADLCSKLLKRVRKKERGESGDERGIAASQNRTQNVYPVPTQSKDSTKRRKPK
QDAESSSRKQLDCQSVSASQFNRPVREEGTGQQCVTVERAPSVAVTQTPSSQASIESAAT
VPGLVASQNADVNLRVKDKVVLRMQQFRWVSPQKMTHMDNDQPRRTALVAEDTIPRSTVP
HAGDPLQGPPGDEALALRLQEELDREEQGPQEMVDLEQGGLFFCQICQRDLSALSPLRRT
QHINRCLDESEGSGPAAPAPPAVPECPICGKMFKHQKSRASHMKRCSAEMGVSSAVLLQA
LQRQAAETASDSAANQPPPAGGSKRKGSLDPPRPPKKRQRKKAAPLDEDTMVALALSRSM
VEQEREREKEKEAMITAPAEDSVRPGLQWRADAGKRRGKKKGHPPAPPPILLVQDSAEAL
RRLQDRVASLLLRARPPTPPTPPRPASRLPGWTGAAPLWQKSALRDEELGLEAEFYTPAL
CPPVQPWAVTEEMQTVAPPAQAQVLPPAGPPLPEPSTPCPPSPSTPGLGSQTFGDLMDLA
EEGLTLSQWGYAPKADHAPDSAPKLTPGPTEDRDVGAGDLRLSGFLPERRRSAAAAENTG
ALFRLTADLSSMVNNPQLSDVQLQVDSGEVFFAHSFMLYARCPLLVQMVHDSGFGVEEEG
MPSARRVLLGDLPPEAVHVLLQYLYCARCPLTPVLVPHLMELALRLDLRELEQVCQGFTG
GAAVEPWVESREQEQRDEEEEEEECVEQKFLELLRSMWEEEEEAEDSGGGGDGEGEEVEG
GGEGRVDEEELLEIYQFAATQRRCREEEEEEKGNVGTETEEEVEHREKTEDGFSPVQTAS
HHHSNCLAIIPSEPGPLDWLSTDHMSQEGSEAKQAAPIADHHSGTEGAGLDRTSQPSPGR
GSNTSLERSYDRLFSETWGDYAGPSQQNVQSSRSQGALIDLSTSPLPDLSGSSLPIAGVS
PEPATGQSCSPHTPTGQALKQKSLGCSQISRPQQEGPGCSQISPTQREPELIVLSDSGEE
CYTPGPPSPPPRPLSPSPRPPQAPAGDFGRGGGSPEDSCAEMSWLVPGTPDPPARTTRVS
STQTHCSLRRTRLFATLTHSSSSSSSSSASLRTGAAPVSVRLAESRESAVPRPAPHSQHC
TKSDPAHDLSSPAHTSAAPPTSSRQSRPPSFALAHPKRPILDGMPSRAFPYLASSTPLPP
QTPSSVTLPPHEERHLESIGISARSSTGGSPPLCLCLSDSSPSSPRKRASPEGGRFSARE
DERGEEGMEGGAEEEEAFPAHMEDPPMAFDESWGLDGGGGRDLRFSLRLDSSTGASQSRQ
GSGETTPPAPPPPSPGNHAQPYTSLLDSKIWDDWEAQGEDEDEEGDRASLPLSQRVQPMA
VGQRVRQLKTPVASRRNARAPLVPITPMPGYSDMDTPELKNKLNRFGVRPLPKRQMVLKL
KEIHQYTHQLLSSGSEEDGPAPDPIPKPHPSSVSMAFKQPERPAPVGAWSKDSTHKQVGP
EQEGEGLSASQGSTASSTAASEDSERSNPELCSLSDSDGSESEGVTASQAGARGAERLQA
VRSFILSDPELYGQVLRYEPLVLSQLQARLKARGIRLAAAKLLDFLDSQCITFTTAKPAK
PGPPRGRGRGRGRRRGRPAKASD
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgacctggacttcgccgacctctgctctaagctcctgaagagagtgcgc
aagaaggagaggggtgagtcgggggacgagcgtgggattgcggcgagccaaaaccggaca
cagaatgtatacccggtgccgacccaaagcaaagactcgacaaagaggagaaagccaaag
caagatgcggagtcgagctctcggaaacagctggactgccagtcagtcagcgcgtcccag
tttaaccgcccggtccgggaggagggcacaggtcagcagtgtgtcaccgtggaacgcgct
ccttccgtggctgttactcagacgcccagctctcaggcatctattgaaagtgcggcaacg
gtgccgggtttggtggcgagtcagaatgcggacgttaatttgagggtgaaggacaaagtg
gtactcagaatgcaacagtttagatgggtcagccctcagaaaatgacgcacatggacaat
gaccagcccaggagaacagcactggtcgctgaggacacgataccccgatcgacagtgcca
catgcgggagacccactgcaggggcccccgggggacgaggccctggccctccggctacag
gaggagcttgaccgggaggagcagggcccgcaggagatggtggacctggagcagggcggc
cttttcttctgccaaatctgccagagggatctgtctgccctgagccccctgcgccgcacc
cagcacatcaacaggtgtctggatgagagcgaggggagtggcccggccgcccccgccccg
cccgccgtcccagaatgccccatctgcgggaagatgtttaagcaccagaagagccgggcc
agccacatgaagcgctgctccgcagaaatgggcgtgtcctccgccgtcctgctgcaggcc
ctgcagagacaggccgctgagacggccagcgactccgcagccaatcagccccccccagca
ggcgggtccaagcggaagggctccttggaccccccccggccacccaaaaagagacagagg
aagaaggctgcgcccctggatgaggacaccatggtggcgctggccttgtcccgctccatg
gtggagcaggagagggagagagagaaggagaaggaggccatgatcactgctcctgctgaa
gactctgtgagaccaggcttacagtggagagctgatgctggtaagaggaggggcaagaag
aagggtcatcccccagccccgccccctatcctcctggttcaggactctgctgaagccctg
aggcggctgcaggatcgggtcgccagcctcctgctccgtgcccgcccccccacccccccg
acccctccccgcccagccagccgcctccccggctggaccggtgctgcccccctgtggcag
aagagcgcgctgcgcgacgaggagctgggcttggaggcggagttctacacccccgctctg
tgcccccccgtccagccgtgggccgtgaccgaggagatgcagacggtggcccctcctgct
caggctcaggtgttacccccagccgggccccccctccctgaaccctccacgccttgccct
ccctcgccctccaccccaggtttgggcagccagacctttggtgacctcatggacctggca
gaggagggcctgacgctcagccagtggggctatgcccccaaagctgaccacgcccccgac
tccgcccccaaactcaccccaggacccacagaggacagagacgtcggcgcgggcgacctg
cggctcagcggcttcctcccggagagacggcgctctgcagcggccgcagagaacaccggg
gcgctgttcaggctgaccgcagatctgagcagcatggtcaacaacccacagctgagtgac
gtgcagctgcaggtggacagcggggaggtgttcttcgcccactcattcatgctgtatgca
cgctgccccctgctggtgcagatggtccatgactcaggttttggcgtggaggaggagggc
atgcccagcgcccgaagggtgttgctaggagacctgcccccagaggccgtccacgtcctg
ttgcagtacctttactgtgcccgctgccccctcacacccgtcctggtgccacacctgatg
gagctggcgctcaggttggacctcagggagctggagcaggtgtgtcagggcttcacaggt
ggagcagcagtggagccatgggtggagtcgcgggagcaggagcagagagatgaagaggag
gaggaagaggagtgtgtggaacagaaattcctggaactgctgcgttcaatgtgggaggaa
gaggaggaagcagaggacagtggtggaggaggagatggagaaggggaggaggtggaggga
ggtggagaggggagggtggatgaggaggagctgctggagatttaccagtttgccgccaca
cagaggaggtgcagagaggaagaggaggaggaaaaggggaacgttggcacagaaacggag
gaagaggtggagcacagagagaagacagaagatggcttttctcctgttcagactgcttcc
catcaccatagcaactgcctggcaattattccctcagagcccggaccccttgattggctc
agcaccgatcacatgagccaggaggggtcagaggcgaaacaggctgcaccaatcgcagac
catcacagtgggacagagggggcaggactggacaggacgtcccagcccagccctggtcga
gggtccaacaccagcctggagaggagttacgaccggctcttctccgaaacctggggggac
tacgcagggccgtcccagcagaacgtccagtcctcccgcagccagggggcgctcatagac
ctgtccaccagccctctccctgaccttagcggctcctccctccccatcgcaggcgtgtcc
ccagaaccagcgacgggccagagctgcagcccccacacgcccacagggcaggccctaaag
cagaagagcttgggctgttcccagatcagccgaccgcagcaggagggcccgggctgttcc
cagatcagcccaacgcagcgggagcccgaactcatcgtgctgtccgattcgggagaggag
tgctacaccccggggcccccctcaccccctcccaggcccctgtcgccctctccccgcccc
ccccaggccccggcgggagactttgggcggggcggaggcagccctgaggacagctgtgcg
gagatgtcctggctggtgccggggaccccggacccccccgccagaaccacgcgcgtcagc
tccactcagacacactgcagcctgcgccgcacacgcctgtttgccacgctcacgcattcc
tcctcctcctcctcctcctcctctgcctccctccgcacaggagccgcccccgtctcggtc
cggctcgcagagtccagagagagcgctgtgcctcggcccgccccccactcccagcactgc
accaagtctgaccccgcccatgacctcagcagccccgcccacacgtccgcagccccgcct
acctcgtccaggcagtccagacccccctccttcgcgctggcccaccccaaacgccccatt
ctggacggaatgccttcccgcgcctttccctatctcgccagcagcacccctctgcccccc
cagaccccctcgagcgtcacgctcccgccacatgaagagcgccacctggagtccatcggc
atcagcgcgaggtccagcaccgggggcagcccgcctctgtgtctctgcctctcagactcc
tccccctcgtctccacggaaacgcgcaagtcctgagggcggacgtttttcagcacgtgag
gatgaacgcggggaagaggggatggagggaggagcagaagaggaggaggcttttcccgct
cacatggaggacccgcccatggcattcgacgagtcgtggggcctggacgggggagggggg
cgggacctgcgcttcagcctgaggttagactccagcacaggggccagccaatcacggcag
ggctcaggagagaccacgccccctgctcctcctcctccttcacctggtaaccacgcccag
ccctacaccagcctgctggactcgaagatctgggatgactgggaggcacaaggggaggat
gaggatgaggaaggggatcgagccagccttcctctctcccagagggtgcagcccatggcc
gtcggacagagagtcagacagctgaaaactccagtggcatcgcgcaggaacgctcgtgcc
cccctggtgcccatcacccccatgccaggctactctgacatggacacgccagagctgaag
aacaagctcaacaggtttggggtgcggccgctgcccaagcgccagatggttctgaagctg
aaggagatccaccagtacacccaccagctgctgagctcgggttctgaggaggatggcccc
gcccctgaccccatccccaagccccaccccagctcggtttccatggcgttcaaacagcca
gagagacctgctcctgtgggggcgtggtctaaagactccacccacaaacaggtggggcca
gagcaggagggcgagggactgtctgcctctcaggggtccacagcctcctctactgctgcc
agcgaggactccgagaggtcgaacccggagctgtgttccctgtcggactcggacggctcg
gagagcgagggggtgacggcgtcgcaggcgggggcgcggggggcggagcggctgcaggcg
gtgcgcagcttcatcctgtccgacccggagctgtacgggcaggtgttgcgctacgagccg
ctggtcctgtcccagctgcaggcccggctcaaagcccgaggcatccgcctggccgccgcc
aagctgctcgacttcctggactcccagtgcatcaccttcaccaccgccaagcctgccaag
cccggcccgcccagggggaggggccgggggaggggccgcaggaggggacggccggccaag
gcctctgactga
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