Anguilla rostrata (American eel): 135250178
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Entry
135250178 CDS
T10705
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03008
Ribosome biogenesis in eukaryotes
arot03013
Nucleocytoplasmic transport
arot03015
mRNA surveillance pathway
arot05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135250178 (nxf1a)
03015 mRNA surveillance pathway
135250178 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
135250178 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
135250178 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135250178 (nxf1a)
03009 Ribosome biogenesis [BR:
arot03009
]
135250178 (nxf1a)
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135250178 (nxf1a)
mRNA cycle factors
Stress granule specific factors
135250178 (nxf1a)
Ribosome biogenesis [BR:
arot03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
135250178 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_4
LRR_9
LRR_8
Motif
Other DBs
NCBI-GeneID:
135250178
NCBI-ProteinID:
XP_064182288
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All DBs
Position
3:complement(12116825..12134594)
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AA seq
649 aa
AA seq
DB search
MKPFRKWYHNFAVVTHMHRDQDHDGVVFQREVRSDGWPIREHDDRVGGPQFRNRKGRGPF
RGRMYSEQTRQRHRGGPGGGPPGPRARFEDDDGDVAMNDSNSQDGSSQRRFNPYGRQGRR
GDGRFGDRRGGGGGGHRMGGGGGGGRKSWFRMTIPHGKKYDKKWLLTALQNLCSVPFTPI
QYHTEGNRAQFFIDDASTANALSKVSRKITDTEGYKVTVLMNPCVPPSSIQTDLKPEDLD
HLKQCMSKRFDGSQQALDLNSIRTDPDLVSQNIEVILNRKSCMQAVIKIIEENIPGLTCL
NMSNNRLYKLEDLAELVSKVPNMKTLNLSNNELKTERELDKLKGFKLVELWLDRNPLCDH
FKDQATYISAVRERFPRLLKLDGHDLPPPIGFDVEAPTTLPPCKGSYFVSDEIKSHILRF
LQQYYSVYDSGDRQPLLDAYHDGASFSLSMPFSGQNPSRCSLGEYHKDSRNIKKLKDPTT
RFRLLKHTRLNVVAFLNELPKTQHDIASFNVDVNTFTNTLLSFTVSGVFKEVDGKSRDSV
RAFSRVFVAVPAGNTGLCIVNDELFVRNATTEEIRRAFAAPAPTPSSSPVPTLSAPHQEM
LSAFSLKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKAIGKIPDVAFLK
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccttcagaaagtggtaccataactttgctgtggttacacatatgcaccgtgac
caagatcatgatggcgtcgtcttccagagagaggtcaggagtgatggttggccgattaga
gagcatgatgacagggttgggggcccccagtttcgcaaccgaaaaggacggggacccttc
aggggccgcatgtacagtgaacagacgaggcagcggcatcgtgggggtccaggaggcggg
cctccaggtcccagggccaggtttgaagacgacgatggagatgtggcgatgaatgacagc
aactcacaagatggaagttcacagcgcagattcaacccatatggacggcaaggtcgccgg
ggtgatgggcggtttggcgacagaagaggagggggaggtggaggccacaggatgggagga
ggtggaggaggggggcgcaaaagctggttcaggatgactattccccacgggaagaaatat
gacaagaaatggctgctcacggctctgcagaacctgtgctccgtgcctttcactcccata
cagtaccacacggaggggaacagggcgcagtttttcatcgacgatgcctccactgccaac
gccctgagcaaagtatcgcgcaagatcacggacactgaaggctacaaggtgactgtactg
atgaacccctgcgtccccccctcctcgattcagacagacctgaagccagaggacctagac
catctaaagcaatgcatgtccaagcgatttgatggctcacaacaagcacttgacttgaac
agcattaggacagacccagacctggtttcccagaacattgaggttattctgaacaggaag
agctgtatgcaggctgtcatcaaaatcattgaggagaatatccctgggctgacatgtcta
aatatgagcaacaacaggctttataagctagaggatctggcagagctggtcagtaaggtg
ccgaacatgaagacactcaatctctccaacaacgagctgaagactgagcgggagctggac
aaattgaagggcttcaagctagtggagctgtggctggacaggaatccgctgtgcgaccat
ttcaaggaccaggccacctacatcagcgctgtgagagaacggtttccgcggttactcaaa
ctggatggtcacgatctgcccccgcccatcggatttgacgtggaagcgcccacgactctc
cccccctgcaagggaagctacttcgtgtcagatgaaatcaagagccacatactgcggttc
ctacaacagtattacagcgtttatgactcgggtgaccggcagcctctgttggatgcctac
cacgacggggcttccttctccctcagcatgcccttctctgggcagaacccctccaggtgc
agtctaggggagtatcacaaggacagccgcaacatcaagaagcttaaagatcccaccact
cgattccgcctgttgaagcacacgcggttgaacgtggtagccttcttaaacgagctgccc
aagacccagcatgacattgcttccttcaacgtcgatgtgaacacgttcactaacacgtta
ctgtcattcacggtcagcggggtgttcaaagaagtggacggtaaatccagagactccgtc
agagcgttttctcgggtctttgtggcagtgccggcagggaatactggcttgtgcatagtg
aacgacgagctgttcgtgcggaacgccacgacggaggagatccggcgagccttcgcagcc
cccgcgccgacgccctccagcagccccgtccccacgctttcggcaccccatcaggaaatg
ctgtccgccttctcgctgaagtccggcatgaacctcgagtggtcgcaaaagtgtcttcag
gacaatgagtgggatttcaaccgagctgctcaaatcttcacacagctaaaggccataggg
aagatcccagacgttgccttcttgaagtga
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