Anguilla rostrata (American eel): 135250348
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Entry
135250348 CDS
T10705
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135250348 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135250348 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135250348 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135250348 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135250348 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135250348 (col4a2)
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135250348 (col4a2)
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135250348 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135250348
NCBI-ProteinID:
XP_064182620
LinkDB
All DBs
Position
3:17671749..17736835
Genome browser
AA seq
1684 aa
AA seq
DB search
MKSEVRMDGAMQVRRRIEFKSLRFSLNTLTTLCLIILVLLTTEVQAGGKKYNQPCGGRDC
SGGCKCFPEKGARGQPGPLGPQGGQGSPGRPGEPGVIGPKGEKGDRGRGGITGPKGSVGM
TGVPGFSGMDGIPGHPGQAGSRGKPGADGCNGTRGDDGTQGRTGLHGYAGHPGNPGRKGE
KGDSLEVSVFMERFRGERGDRGFPGYTGPAGLPGLTGRQGHVGPQGPPGFPGPPGPKGTM
TKTLKGQKGEPGDAGEPGPPGNSTHPHTKTPSGLPGLKGEKGFQGERGDLADNWVIGEVG
VMGYPGQRGSPGLDGQPGETGDAGEPGQGGRDGAKGERGEPGEFIPIGPIPPAPPGPNGQ
PGPQGEKGEPGEKGLPGTPGTPAYPTSETRFNKGSFGPKGFKGSKGPDGDPGIPATVPGP
PGYDGYPGDPGAPGERGSWGNEFRGPKGEIGQPGAGGQQGQKGDEGLCQCDNVNSPPGPP
GPPGSPGIQGMSGEWGQQGDPGSPGPRGAPGLPGLQGQEGLPGPKGSKGRPMKATQKGFP
GDPGDPGTTGNQGESGQPGPIGSPGAPGLRGRPGEGPVGPPGEKGGPGRPGAPGRAGLMG
EPGVVLGAKGLPGLPGDAGYDGFDGSPGPPGVQGGCVLEGNRRREDGTGECDPVPGPAGK
PGLPGPIGLDGSQGTPGPKGFQGLFGEEGLKGEQGDPGRGGPMGHPGFVGPRGDRGSPGS
KGRQGSPGDLGRRGLDGEPGQKGNHGEVVGASTGPSGEPGPPGLQGAKGNIGDPGQPGYP
GMEGMPGILGSKGELGPPGLQGEEGRPGPPGKYGFRGFPGQTGPPGSPGSIGEPGPAGDR
GDDGDPGPPGPFGRKGIPGEPGSVGPKGNEGQQGNPGLPGRPGHAGLPGVKGSRGSTGMT
GFEGMPGVKGKLGFAGQKGEQGFSGTPGYKGAMGKKGVKGDRGLQGPPGEKPYIPPYMMK
EMKGTKGDHGKLGDYGFVGPRGSKGYPGLPGGTGTDGMPGEPSDEKGAKGNFGAEGLPGH
KGMPGLPGQPGIQGFPGMTGHRGEKGTPGAYGRSGEDGVKGRKGEGGPIINLPGPTGERG
NPGFPGQLGVKGFNGLLGERGSSGFNGIDGLKGEKGQPGTEGPAGSDGKNGSPGHHGHKG
WPGTPGEPGFGGHPGLPGQRGFPGLKGIFGLDGLKGQKGIPGVPGSDNGGLAGDPGTKGE
KGEAGIPNTERGLPGLLGSKGSRGDSGDQGEPGPPGFQGPPGIHGISDIQGAQGDPGFPG
AKGHQGFPGFQGRPGVPSTSGSKGDRGQPGPFGERGSIGTQGDQGQQGFPGRNGLSGNKG
ATGEQGLMGTPGRPGFKGDKGPVGPKGNTGFPGFPGVPGDQGPVPTPPKQPGERGPPGAH
GIRGPEGHRGEFGPQGPPGDPGFMGPQGQKGMPGVSGTPGTPGYRGDVGQGGHQGLQGLQ
GSPGRPGAPGITGMPGRSVSVGYLLVKHSQSDQTPMCPVGMAKLWDGYSLLYFEGQEKAH
NQDLGLAGSCLPRFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPIPMMPVEETEIRPYI
SRCSVCEAPSVAIAVHSQDTTIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCL
EDFRTTPFIECNGAKGACHYFANKQSFWLTSIEHSFQSRPAAETLKAGQQLSRISRCQVC
MKNL
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctgaagtacggatggacggggccatgcaggttcgacgcaggatagaatttaaa
agtttaaggttttcgcttaacacgctgacaactttgtgcctaataatcctcgttcttctg
acgaccgaagttcaagccggtggaaagaagtacaaccagccatgcggagggagggactgc
agcggagggtgcaagtgcttccctgagaagggcgcccggggacagccaggccccctagga
ccacagggaggccagggatccccaggacgaccgggtgagcctggtgtgatcgggcccaag
ggagagaagggggaccgtggacgtggcggcatcaccgggccaaaaggatccgtgggaatg
accggagttcctgggttttctgggatggacgggattcccggtcaccctggacaggcagga
tctcgtgggaaaccaggtgctgatggctgcaatggaacacgaggagacgacggaacgcag
ggcagaacaggcctacatggctatgcaggtcatcctggtaaccctggcagaaagggtgag
aaaggtgactctttggaagtcagcgtgttcatggaaagatttcggggagaaaggggtgat
cgtggctttccaggatatacaggccctgctggtttacctggtttgacaggacgtcagggc
catgttgggccacaggggccccctggatttcctggccctccagggccaaagggcacaatg
actaaaacgttgaaggggcagaaaggtgaaccgggcgatgccggagagccaggccccccc
gggaactctactcacccccacaccaagaccccctcagggctaccggggctgaaaggggaa
aagggtttccaaggtgaaaggggagatttggctgacaactgggtgatcggagaagtgggt
gtgatgggatatccagggcaaagggggagccctggtttagatgggcagccaggagagacg
ggagatgctggggaaccagggcaaggtggaagagatggagccaagggtgaaagaggagag
ccaggagaattcattccgatcggtccaattccaccggcgccccctggtcctaatggacag
cccgggccccagggggagaagggggaacctggggagaagggactccctggaaccccagga
acgcctgcctatcctacttccgaaactaggttcaataagggctcatttggcccaaagggg
ttcaaagggagcaagggtcctgacggtgacccagggatacctgccacggtgcctggtccc
cctggttacgatggatatccaggagaccctggggccccaggagagaggggatcttgggga
aacgagttcagaggtccgaaaggtgaaatagggcagccaggtgctggtggacagcagggt
cagaaaggtgatgaaggcctgtgccagtgcgacaatgtgaactccccacctggccctcct
ggacctccaggtagcccgggaatccaaggcatgtcgggcgagtggggccagcaaggcgac
ccaggcagtcctggcccacgcggggctcctggactgcctggtctccaaggccaggagggt
ctaccaggtccaaaggggagtaaaggaagaccaatgaaagccactcagaaaggatttcct
ggagatccaggggacccaggtacaacaggaaaccagggtgaaagtggtcaacctgggcct
ataggatctcctggagcccctggactgcgtggtcgacctggtgaaggtccagtgggacct
cctggagaaaagggtggtcctggccgcccgggggcacctgggagagctggactgatgggc
gaaccaggtgtggtccttggagcaaaaggacttccaggtctcccgggagacgctggctac
gacggttttgatggaagccctggacccccaggtgttcaaggaggctgtgttctggaagga
aacaggaggcgggaggatggaacaggagagtgtgatccagtgccagggcctgctggtaaa
cctgggctacctggccctatcggtttggatggttcacaaggcacacctggacccaaaggt
tttcaaggactgtttggggaggaggggctcaaaggagaacagggtgatccaggcagaggt
ggaccaatggggcatccagggtttgtggggcctcgtggagataggggttcacccggcagc
aagggaaggcaggggtctcctggggacctgggaaggcggggcctggatggagaaccggga
cagaaaggcaaccacggggaggttgtgggggcttccacaggaccttccggagagccaggg
ccccctggcctacaaggggctaaaggcaacattggagaccctggccagcctggataccca
gggatggagggcatgccaggaatccttggctccaaaggagaactgggtcctccaggcctg
caaggggaagaagggaggccagggccgccaggaaagtatggcttccggggattcccagga
cagacaggccccccaggttctccagggtccattggagaaccaggccccgctggtgacaga
ggagatgacggtgatcctggcccaccaggcccttttggaaggaagggaatacctggtgag
ccaggtagcgttggtccaaagggaaacgaggggcagcagggtaacccagggttaccagga
cgacctggccacgctggtcttcctggagtcaaaggttccagaggctcaacagggatgaca
gggtttgaaggcatgccaggtgtcaagggaaaactaggatttgcaggacagaaaggagaa
caggggttttctggaaccccaggttacaaaggtgccatgggaaagaagggagtaaagggt
gacagagggctgcagggccctcctggtgaaaagccatacattcccccatacatgatgaaa
gagatgaaggggaccaagggcgaccatgggaaattaggagattatggcttcgtaggtccc
agggggtctaagggatacccaggcctgccaggagggactggtactgatggtatgccggga
gagcccagcgatgagaagggtgccaagggaaactttggggcagaagggcttccagggcac
aaaggaatgcccggcctccctggacaaccgggaatccagggctttccgggaatgactggc
cacaggggagagaaaggaacacctggagcttacggccgctcaggggaagacggtgtgaag
ggacgcaaaggtgaaggcggccccatcatcaacttacctggacccacaggtgaaaggggg
aaccctggctttcctggacagttgggggtcaagggcttcaatgggctgctgggagagagg
ggcagctcaggcttcaatggcattgatggtctgaaaggagagaagggtcagcctggtact
gaaggcccggcagggtctgatgggaaaaatggttccccaggacaccatggccacaagggg
tggcctgggaccccaggagagccagggtttgggggtcatcctggcctcccagggcagaga
ggttttcctggtctgaagggcatatttggtctggacggtctaaaggggcagaaaggcatc
ccaggagtcccaggttcggataacggaggactggcaggagaccctgggactaaaggggag
aaaggagaagcagggatccccaacacagagagaggattaccagggctgttgggttccaag
ggatctcgcggagactcaggtgatcaaggtgaacctggaccccctggatttcagggcccc
cctgggatacacgggatatctgacatacaaggcgcacagggtgaccccggtttcccaggg
gcaaaagggcatcaaggttttcctgggtttcaagggagaccaggtgtaccctcaaccagc
ggaagcaagggggatagaggacagccaggaccttttggggagaggggctcaataggtacc
caaggagatcagggacagcaaggattcccagggcggaacggactgtctgggaataaaggt
gcaacgggagagcaggggctgatgggaactcctggaaggcctggtttcaaaggagacaaa
ggacctgtcggtccaaaaggcaacactggatttccaggattccccggggtgcctggtgat
cagggcccagtacccaccccacctaaacagcctggggagaggggcccgcctggtgctcat
ggaatccgtggacccgaaggacatcgtggggagtttggcccccaagggccgcctggagac
ccaggcttcatgggtccccagggacagaagggcatgccaggagtcagtggcacacctgga
acaccaggttaccgtggagatgtcgggcagggtgggcaccaaggtctccagggccttcaa
gggagtccgggccgccccggtgcccctgggatcactggaatgccggggcgcagtgtgagc
gtggggtacctgctggtgaagcacagccagtcggaccaaacgcccatgtgtcccgtgggc
atggccaagctgtgggatgggtacagtctgctgtactttgagggtcaggagaaggctcac
aatcaggacctgggcctggctgggtcttgtcttcctcgtttcaataccatgcccttcctc
tactgcaaccccggggacatttgctactatgccagtcgcaatgacaaatcctattggctg
tccaccactgcccccattcccatgatgccagtggaggagacggagatcagaccctacatc
agccgctgctccgtatgcgaggcgccatccgtggctattgcagtgcacagtcaggacact
acaatcccacaatgccctgcgggctggcgcagcttgtggattggctactctttcctcatg
cacacggctgccggagacgagggcggcgggcagtccctggtgtcacccggctcctgcttg
gaggacttccgcaccacgcccttcatcgagtgcaacggggccaaaggggcctgccactac
tttgccaataagcagagcttctggctcacttccatcgagcactccttccagagccggcca
gccgcagagacgctcaaggctggccagcagctgtcccgaatcagccgctgccaagtgtgc
atgaagaacctgtga
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integrated database retrieval system
