Anguilla rostrata (American eel): 135250351
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Entry
135250351 CDS
T10705
Symbol
col4a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135250351 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135250351 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135250351 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135250351 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135250351 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135250351 (col4a1)
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135250351 (col4a1)
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135250351 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135250351
NCBI-ProteinID:
XP_064182624
LinkDB
All DBs
Position
3:complement(17619235..17671670)
Genome browser
AA seq
1639 aa
AA seq
DB search
MLLTSCALFLAIIYSGVEWTRAEGCAGAGCGGKCDCSGVKGEKGERGFPGLQGNMGFPGM
QGHEGPTGPMGPKGDYGMPGAPGMKGIRGPPGLPGFPGNPGIPGIPGQDGPPGSPGIPGC
DGKKGERGTDGLPGVSGLPGPPGTPGDPGMKGDAGGVIEGFIPEKGEKGLAGFPGSQGPP
GPAGGSGPVGPTGPQGPRGYPGPPGPPGPKGDRLTFLGEKGEKGGPGSPRPPGRPSHESG
HPPVTHIEQGPQGEKGTPGDKGEKGYCQPYHSGVKGEQGPPGPRGKPGKDGEPGSKGERG
YLGAPGYSGQPGEKGDRGPPGNAGGPPGPPGHSGSPGIKGERGFPGSHGDSGLPGRNVEG
PKGETGYPGESGQKGEQGPPGQSLSGPSGEDGRPGSPGPPGPPGDGDCTMERGFPGYPGP
PGLNGELGQKGEKGDTCLHCETAGVRGLPGAQGPPGRQGFPGAAGRKGEKGSPGLAGAPG
NQGTPGNPGLMGAPGAHGAPGDIHVAPGLKGEKGVPGTHGQNGLPGVDGLPGRDGLSGQP
GPKGEPATVGIKGDRGLDGDPGLIGTPGERGPPGIPGYGQPGEPGEKGSHGAPGRPGAPG
SVGPKGEPGKGVSSPGPQGTPGPRGETGRTGLQGDRGPHGDPGAPGSPGRKGDPGLPGIG
LPGLPGPKGYTGMSGAPGVPGEPGRPGQNGFDGRPGKNGQKGEPGRGLPGPKGYMGPQGV
TGFPGEKGSIGLPGIPGQEGQTGPPGAQGIKGEPGPTGRHGVEGPPGPPGLGEQGLPGPM
GPPGLPGPFGRGGVKGDKGYPGPAGLDMPGPQGEKGTPGFQGVPGSKGLPGRQGPAGRDG
FPGHQGIKGEMGVIGIPGPPGQPGSPGNIGSPGLRGHPGFDGQKGDFGDIGPKGERGDPG
QRGPAGNMSDVDMDQMKGEKGDLGDRGKPGGTGQKGHQGQPGVPGMPGKDGYPGSPGQPG
EKGDLGEPGVPGRAGTPGLKGHIGEMGLPGFSGPKGTKGTNGTPGHPGFPGLTGDKGEKG
DGGLPGVGVPGPPGEKGQNGEPGFPGSPGDKGHKGAMGIPGMPGKPGQKGDIGFEGHQGS
PGRPGEKGVPGLPGGAGEPGLQGRPGEPGLQGPSGPQGEKGEPGIDGIPGSSGERGDPGL
PGRGFPGNPGQVGSKGDKGSPGFSGIPGSPGIPGTKGDKGYPGTLGQQGRPGERGPPGSS
MEGPKGDRGLPGEPGEQGSPGAPGPAGVPGLAGSKGDKGDHGYPGPPGQEGLKGEIGPPG
APGHTGLPGFNGPKGEIGQPGFPGFQGIKGEAGAAGGKGELGDRGFPGVKGNIGPPGPQG
PHTFIKGDIGLPGPRGLEGPRGSQGFPGSKGLQGVTGRQGPKGEDGQPGYHGRPGTKGEP
GPVGPAGPRGYTGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQSVDVPQCPAGTGLIYDG
YSLLYVQGNERSHGQDLGTAGSCLKKFSPMPFLFCDINNVCNFASRNDYSYWLTSPEPMP
MSMAPVTGDSIKPFISRCSVCEAPAMVIAVHSQTIMIPACPNGWDSLWIGYSFVMHTSAG
AEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKPVPTTL
KAGNLRTHISRCQVCMKRT
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgctgttgactagctgcgccttgttcctagcgatcatctactctggtgtggagtggaca
agggctgagggctgtgcaggtgcaggatgtggaggaaagtgtgactgcagcggtgtgaaa
ggagaaaagggtgagaggggatttcctggcctgcagggcaacatggggtttcctggaatg
caaggacacgagggcccaacggggccgatggggcccaagggcgattacggcatgcctgga
gctcctggaatgaaaggcatacgtggtcctccggggttacctggattcccaggaaatcca
ggcattccgggaatcccaggacaggatggccctcctggttcaccaggaatcccaggatgc
gacgggaaaaagggagagcggggcactgacggactcccgggcgtatcaggactgccaggt
ccacctggtacccctggtgacccaggaatgaagggtgatgcaggtggtgtcattgagggt
tttattccagagaaaggcgaaaaagggcttgctgggtttccaggttcgcaggggccccca
ggacctgcgggaggttcagggccagttggacccactggccctcagggacccagaggttat
ccaggtccacctgggccacctggaccaaagggtgacaggctgactttcctgggtgaaaag
ggagaaaagggaggtccaggtagtccccggccaccaggacgcccttctcacgaatctggg
cacccccccgttacccatatcgaacaaggacctcagggtgaaaaaggtacacctggtgac
aaaggagaaaagggctactgtcagccataccacagcggggtcaaaggtgaacaaggtccc
cccggccccaggggtaaaccaggcaaggatggagaacctggcagcaaaggggagagaggt
tatcttggagcacctggatacagtggacagccgggcgaaaaaggcgacaggggaccccct
ggaaacgctggtggcccccccggaccgcccgggcactctggttctcctggaataaaagga
gaacgaggttttcctggtagtcacggagactcaggtctaccaggcaggaatgtggagggt
cccaaaggagagacagggtaccccggagaatcagggcagaagggagagcaggggccgcct
ggccagtctctttcaggcccaagcggcgaagacggacgccctggatcacccggaccccca
ggacccccaggagacggagactgcactatggagcgagggttccccggataccccgggccc
cctggactcaacggcgaactgggacaaaagggtgagaaaggggacacctgcctgcactgt
gagaccgctggggtccgtggattacctggcgcccagggcccccccgggagacaaggtttc
cccggagccgccgggcgaaagggagagaagggctcacctggacttgctggtgctcctggg
aaccagggtacgcctggcaacccagggctgatgggggcccccggtgcccacggtgcgccg
ggcgacatccacgtggcaccgggactgaagggggagaagggcgtgcctggcacccacggc
caaaatgggctgccaggtgtggatgggctccccggcagagatgggttatcgggccagccc
ggacccaagggagagccggcaactgtgggtatcaaaggagaccggggtctagatggggac
cctggtttgatcggcactccaggagaaaggggtcctccaggtatccctggttacgggcaa
ccaggagagcctggtgagaagggcagtcacggggcaccaggacgtcctggagctccaggc
tctgtaggacccaaaggcgaaccggggaaaggtgtgagctcgcctgggccacaggggact
cctggacctcggggtgagacggggagaacgggactccaaggtgaccgaggtccccacggt
gatcccggggcaccaggttcccccggacggaaaggtgacccaggcctcccaggaatcgga
cttcctggcttacctggacccaaagggtatacgggtatgtcaggggctccgggagtgccc
ggagagccaggtcgtcccgggcagaatgggtttgatggacgtcccggtaaaaatggacaa
aagggtgaaccgggacgaggcttgccagggcccaaaggctacatgggaccccagggggtc
accggtttcccaggagagaaggggagcatcgggcttcctggaatcccaggacaagagggg
cagacaggacctcccggagctcaaggaatcaaaggtgaacctggacctactggaagacat
ggagtagagggccccccaggtcccccgggactgggcgagcaggggttacctggacctatg
ggtcctccgggcttgcctggccccttcgggcgtggcggagtgaagggagataaggggtac
cccggtcccgccggtttggacatgcctgggcctcaaggggagaagggtaccccagggttt
cagggggtcccaggatcaaaggggttgcctgggcgacaaggccctgcgggaagagatggt
tttccaggccatcaaggtattaaaggagagatgggggtgattggaatcccaggacctccc
ggacagcctggttcccctggaaatattggttcccctggattacgaggtcaccccggtttt
gatggtcaaaaaggtgattttggtgatattggacctaagggagagcgaggagatcctggt
caacgggggcctgctggcaacatgagtgatgtggacatggaccaaatgaagggagagaag
ggtgacctcggggacagaggtaaacctggggggacaggtcaaaaaggacaccaaggacag
cccggagtaccgggaatgccagggaaagatggatatccaggttcacctggacagccaggt
gagaaaggtgacctcggagaaccaggtgtaccaggacgcgcaggcacccctggactgaag
gggcatataggagagatggggcttccaggattttctggacccaagggcactaaaggaaca
aatgggaccccagggcatccaggattcccgggtttgaccggggacaaaggagagaagggg
gatggaggtctgccaggtgttggggttccaggaccaccaggcgaaaaggggcaaaatggt
gagccaggatttccaggaagcccaggagacaaggggcataagggtgcgatgggtatcccg
ggaatgccaggaaaaccaggacagaagggagacattgggttcgagggtcaccaaggtagc
cctgggcggccaggtgagaaaggagtccccgggttacctggtggagcaggtgaaccgggt
ctgcaggggcgaccaggggaaccaggtctacagggcccttcgggtccacaaggggagaag
ggagagcctggcatagacggaatcccaggatcctcaggagagaggggagatccagggtta
cctggaagaggcttccctggaaacccgggtcaggtcggcagtaaaggtgacaaaggcagt
ccaggtttttcgggaattccaggaagccccggtatcccgggaaccaagggggataagggt
tacccaggcaccctagggcagcagggccggccaggggagcgggggcccccggggtcatcc
atggaggggcccaaaggagacagagggttacctggggagcctggagagcaaggctcacct
ggggccccggggcccgccggagtaccgggactggctggctcaaagggggacaaaggagac
catgggtacccggggcctccaggacaagaaggactcaagggggaaataggaccacctggt
gctcctggacatactggactgccaggatttaatggaccaaagggagaaattggacagcca
ggcttccctggattccaagggattaaaggagaagctggagcagctggagggaaaggagaa
ctgggagacagaggtttccctggagtgaaaggaaacattggcccccccgggccccaggga
ccccacacatttatcaaaggggacatcggccttcctggcccccgcggactggaaggcccc
agagggtcacaagggtttcctggatctaaagggctgcaaggtgtgacaggacggcagggt
ccaaaaggagaggacgggcagccggggtaccatggtcgaccaggcaccaagggagagcct
ggccccgtcggcccagcgggacccagagggtacactggccccccagggcccgacggagtg
cccggtcaggtggggccacccggtccctcctccatggaccacggcttcctggtgacccga
cacagccaatcggtggatgttcctcaatgccctgcgggcaccggcctcatctacgatggg
tactccctcctttacgtccagggcaacgagaggtcacatgggcaggacctgggtaccgcg
gggagctgcttgaagaagtttagccccatgcccttcctcttctgcgacatcaacaacgtc
tgcaacttcgcctccagaaatgactactcctactggctgacctctcccgagccaatgccc
atgagcatggcgcccgttaccggtgacagcatcaagcccttcatcagcaggtgttctgtg
tgtgaggcccctgccatggtgatcgcggtccacagccagaccataatgatccccgcatgc
ccgaatggatgggactccctgtggatcggatactccttcgtcatgcacaccagcgctggt
gcggaaggttccggtcaggccctggcgtcccccgggtcctgcctggaggagttccgctcc
gccccctttatcgagtgccatgggcgtggcacctgcaactactacgccaactcctacagt
ttctggctggccaccatcgaggacgaagatatgttcacgaaacccgttccaaccaccctg
aaagctggcaatcttcgaactcacatcagcaggtgccaggtgtgcatgaagagaacataa
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integrated database retrieval system
