Anguilla rostrata (American eel): 135251220
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Entry
135251220 CDS
T10705
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135251220 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135251220 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135251220 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135251220 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135251220 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135251220 (col4a6)
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135251220 (col4a6)
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135251220 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135251220
NCBI-ProteinID:
XP_064184511
LinkDB
All DBs
Position
3:56112774..56207268
Genome browser
AA seq
1729 aa
AA seq
DB search
MKYWICIFAVVSAVLESAHAGTKIEEPCAGRDCSGGCQCNPEKGSRGRPGPLGPMGPNGP
EGFVGGSGPSGPKGDKGHVGLRGPSGPKGDKGPMGVPGFPGTDGVPGHPGQDGGRGLPGI
DGCNGTIGDPGPRAGDGLSGLPGVVGPPGRKGQKGEPVFTGLGRGARGEPGLPGLDGLIG
QNGPSGLPGQMGRRGQDGYPGFPGPPGPPGPTGSPGVGLKGESGDKGDAGLPGPPGEQGD
DTLVGAAISTIFKGDKGDVGLPGDPGLPLVNGVVEFVGFPKGDKGTKGDIGYQGISGQPG
LPGPPGRFGYPGEVGEKGILGLPGGRGASGLNGPLGPPGIKGLPGSPGLPGYPGYPGSKG
EYGDQGFPGPPAFADGQGVSVQGSPGDPGISGLPGPTGDQGPSGFPGPPGPPGLSSPLSG
RPGRDGFPGTIGPKGEKGNPGRPAYGTEGRPGSPGFPGPPGPPGPIGENGLSNVLPSDIP
GQPGQPGQRGPPGVSGANGPKGDLGDCQCLGGGGFGQQGPPGPSGAPGSPGLLGRKGEIG
DTGSPGFPGLPGPSGIPGEWGFSGRKGEKGEPSFPQGLGQKGELGSPGPRGPPGDMGRPG
RDGTPGIPGYPGPPGDGGDGVVGERGFPGLPGAKGRPGGPGEPGIGYPGTAGIRGLPGDP
GINGLPGQPGLRGPPGDCCCGQAGVNEASFEEGGETLPCRISGEDGDPGLPGSPGSPGLK
GQPGFPGDAGRRGFDGLKGERGDSGIGGLPGPQGFPGPRGDPGAPGLSADGLPGAQGKNG
LLGRPGEKGRPGEVLGATPGAPGLPGRPGELGDKGQPGTPGLPGGPGFDGRSGVPGLKGE
RGEDGYPGIPGQPGLPGDGVQGGIPGLAGPAGSKGFSGVPGFPGLKGSSGDPGPPGPAGM
KGLPGDPGTPGQPGLRGLPGPAGPGAGNGFPGTPGRKGEKGSPGMLGFPGMPGSSGAPGM
PGLKGSPGFPGRNGLPGEFGAKGLKGDRGTSGRPGPASLPPRVGQLVKGEIGDSGQSGFS
GFPGPRGDKGSRGPPGQQGLPGLPGFPGQEKGQPGAPGLPGTSNVPGLPGPKGSPGIIGF
SGMPGPRGDDGAPGQPGFPGGPGQPGIKGERGDSFSVPGAPGAKGLPGDPGFPGGKGSAG
FPGDPGFPGSSGFSGQKGLPGEPGRPGQTGTPGFPGSKGLGGFPGPRGSEGSPGFPGTPG
TPGQKGLPGSPGLDGLNGLGGAKGLPGTPGLSDGGRPGAPGIPGQKGETGPSLPGTPGIP
GAKGAVGNQGAPGMTGFPGLPGPRGVSVVSDVVGPPGDPGLPGLDGEQGFRGPTGPPGPA
GPGTYQGDRGNPGTPGRPGEPGASGDPGAPGGSGLPGVAGLKGERGETGSSGTPGLPGYQ
GEPGSFGQRGPKGIPGSAGRKGLPGIVIPPSTLPKISGEFGLSGTPGFPGELGPPGQPGN
PGRYGSKGKPGLPGKLGPSGPGGIPGPAGDFGTPGFPGSIGAQGTPGKQGPPGLPGLNPR
STGIGYTLVKHSQSSQVPPCPQGMAKLWEGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTI
PFLYCNVNELCYFASRNDKSYWLSTTAPIPMMPVEEQQISQYISRCSVCEAPSQAVAVHS
QDLSIPSCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGPRGT
CHYFANKYSFWLTTVQPERQFVEAPPQQTLKAGQLRSRVSRCQVCMKIL
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgaaatactggatttgtatatttgctgttgtctcggctgtcttggaatctgcgcacgcg
gggacgaagattgaggagccatgtgctggacgggactgcagcggagggtgccagtgcaat
cccgagaagggaagcaggggtcggccaggacctttggggccgatggggccaaatggacct
gaagggtttgtgggagggtcggggccctcgggacccaaaggagacaaaggccatgtggga
ctcaggggaccctccggaccgaaaggagacaaggggccaatgggtgtgccaggtttcccg
ggaactgacggtgttccaggtcaccctgggcaggacgggggcaggggacttccaggaata
gacgggtgcaacggcaccatcggcgacccaggtcccagggctggggatggattgtcaggc
ctgcctggtgttgttgggccacctggtcggaagggtcagaaaggagagcctgtgttcacg
ggactgggcagaggcgcaaggggagagcctggtttgcctggactggatggtctgattggt
caaaatggcccgagtggactccctgggcaaatgggtcggagaggtcaagatggataccct
ggtttccctggtcctcctggtccacctggtcctacagggagccccggtgtgggtttaaag
ggggaaagtggagacaagggggacgcgggtctacccggacccccaggagagcagggggat
gacacgctagtaggcgcagctataagcactatcttcaaaggagataagggagacgtgggc
ctgcccggcgacccaggcctcccactggtcaatggagtggtggagtttgtgggctttcct
aaaggagacaaaggaactaagggtgacattggttaccaggggatatcaggtcagccagga
ctaccaggaccaccgggccgttttggatacccaggcgaggttggtgagaagggaattctg
ggattgccaggaggacggggtgcttctggtttgaatggacctcttgggcctccgggcatc
aaggggttacctgggagccctggcttgcctggatatccaggatatcctggatctaaggga
gaatatggagatcaaggatttcctggacctcctgcatttgctgatgggcaaggggtgtct
gtccaaggttcccccggagacccagggattagtggcttaccaggtcctactggtgaccag
ggaccatcagggttcccaggaccacctggacccccagggctctcgtcccccctctcaggt
cgaccagggagggacgggttcccaggtaccattggccctaaaggagagaaagggaaccca
ggacgccctgcctatggcactgaggggcgcccagggtccccaggctttccaggtcctccg
gggcctccagggccaataggtgaaaatggtctttcaaatgtattgccatctgacatacct
ggacaaccgggacagccaggccaaagagggccacctggagtttcaggtgcaaatggaccc
aaaggagatttgggtgactgccaatgcctcggtggtggagggtttggtcagcagggccca
ccaggcccttccggggcccctggttcccctgggttacttggcaggaagggcgaaattggc
gacacaggctcaccaggcttccctggcctcccagggccctctggtatccctggtgaatgg
ggcttttcagggcggaagggggagaagggtgaaccctccttcccacagggcctgggccag
aaaggcgaactaggctcaccggggccccgtgggcccccaggagacatggggcggcctggc
agagacggcactcctgggatccctggatatcctggaccccctggagatggtggtgatggc
gtggtcggggaaagaggattcccagggcttcctggtgctaaggggcggcccggcggtcca
ggagagccagggattgggtatccaggcactgctggcatccgtgggctacctggagacccc
ggtatcaatggtctccctggacagcctggtttacgtgggcccccaggtgactgttgctgt
gggcaggcgggtgttaatgaggcctctttcgaagagggaggcgagactctgccctgtcgg
atctcaggcgaagacggtgacccgggtctgcctggatctccaggatctccaggtctgaaa
ggccagcctggtttcccaggggatgctgggcgacgtggttttgatggcttgaagggtgag
agaggagactcaggcattggggggctgcctggaccacaaggtttcccaggtcccagaggc
gacccgggggcccccgggctctcggctgacggccttcccggtgctcagggaaagaatggc
ctgcttggtcgtccaggggagaagggaagaccgggtgaggtgctgggggccactccagga
gccccaggtctgccaggacgccctggagaactaggagacaaggggcagccagggacgccg
ggattgcctggtggaccaggttttgatgggcgttcaggggtacctgggctgaagggtgag
cgcggtgaagacggctaccccgggatcccgggtcagcctggcctgcctggggatggtgtg
cagggagggatcccgggccttgcaggacctgctgggagcaagggtttctctggagtgcca
ggattcccagggctcaagggctcttctggagaccccggacctccagggccagctgggatg
aagggcctgcctggagacccagggacccctggccagccaggactcaggggcctcccaggg
ccagcaggacctggtgcaggaaacggcttccctggaacaccaggaaggaagggtgagaag
gggtcacctggtatgttggggttccccggaatgccaggaagctctggtgcccctgggatg
cctgggttgaagggttcaccaggtttccctggacggaatggcttgccaggagaatttggt
gcaaagggtctaaaaggggaccggggtacgtctggacgtccaggaccggcgtctttgcct
cccagagttggccagcttgtgaaaggggagataggggacagtggccagagtggcttttct
ggattccctggaccaagaggtgataaagggagccgggggccgccaggccagcagggtctg
ccaggtctgccaggtttccctggtcaggagaaggggcagcctggagccccagggcttcct
ggaacttccaacgtccctggcctgcctggaccaaagggttctccgggaattattggcttc
tctggcatgccagggcccaggggtgatgatggggctcctggtcaacctggattccccgga
ggcccaggacagcctggtataaaaggtgagcgtggtgactccttcagtgtacctggagcc
cctggtgctaaaggacttcctggagaccccggatttcccggtggaaaaggtagtgcaggc
tttccaggagatcctggtttccctggatcttctggattcagtggacagaagggcctccct
ggagagccaggccgtccaggacagacgggtaccccagggttccctggtagcaaaggtctt
ggagggttcccaggacccagaggatcggaagggtcaccaggttttccaggaactccaggc
actcctggccagaaaggtttacctggctctccaggtcttgatggtctgaatggacttggt
ggagctaaaggtctacccggaactccaggtctaagtgacggaggtcgtcctggggcacca
ggcattcctgggcaaaagggggaaacagggccatctttacccggaactcctggcatccct
ggagccaaaggggccgtaggaaaccaaggtgcacctggtatgacgggtttccccggtctg
ccgggccctcgaggggtctctgtcgtctctgacgttgtaggtccccctggagatcccggt
ctacctggattagatggagagcaaggtttccgaggtcccacaggccccccgggtcctgct
ggcccaggcacttaccagggtgacagaggcaacccaggaacccctggcagacctggtgaa
cctggtgcaagtggtgaccctggggccccaggaggctctggactacctggcgtcgcagga
ctcaaaggtgaaaggggtgaaactgggtccagtggaactccaggacttccaggctaccag
ggagaacctggatcttttgggcaacgaggaccaaaggggatcccaggctctgctggcagg
aagggacttcctggtatagttataccaccaagcaccttgccgaagatttcaggagagttt
ggactttcaggaaccccagggtttccaggagagttgggtccccctggtcagcctggaaat
cctggtcgttatggttcaaaaggaaaacctggacttccagggaagttggggcctagcggg
cctggaggtataccaggaccagctggagattttggcaccccaggatttcctggatctatc
ggagcgcagggtacccctgggaaacaggggccccctggcctccctggactcaacccccgc
agcaccggcattggctacacgctggtgaagcacagccagtccagccaggtgcccccatgt
ccgcagggcatggctaagctgtgggagggctacagtttgctgtatgtggaaggccaggaa
aaggcccacaatcaggacctgggatttgcaggttcctgcttgccccgttttagcaccatc
cccttcctgtattgcaacgtcaacgagctctgctatttcgcaagccgcaacgacaagtcc
tactggctgtccaccactgcgcccatccccatgatgcccgtggaagagcagcagatctcc
cagtacatcagccgctgctccgtgtgcgaggccccctcccaggccgtggccgtccacagc
caggacctctccatcccctcctgccccctcggctggaggagcctgtggattgggtactcc
ttcctcatgcacaccgcggctggggcggagggtggaggccagtccctggtttctcccggc
tcctgcctggaggacttccgcgccacgcctttcatcgagtgcaacggcccccgtgggacg
tgccactacttcgccaacaagtacagcttctggctgaccaccgtgcagccggagcggcag
ttcgtggaggccccgccgcagcagaccctgaaggccggccagctgcgctcgcgcgtcagc
cgctgccaggtctgcatgaagatcttgtag
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integrated database retrieval system
