Anguilla rostrata (American eel): 135251221
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Entry
135251221 CDS
T10705
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135251221 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135251221 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135251221 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135251221 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135251221 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135251221 (col4a5)
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135251221 (col4a5)
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135251221 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135251221
NCBI-ProteinID:
XP_064184516
LinkDB
All DBs
Position
3:complement(56057595..56111471)
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AA seq
1688 aa
AA seq
DB search
MKNKNVKSLQNLVVGLLFITLCTGVLDSEAAACHGCVSGSNCDCSGVKGAKGERGFPGLQ
GQPGVPGFPGPEGPLGPRGEKGNDGPPGPAGPKGIRGPPGLPGFPGTPGIPGLPGQDGPP
GPRGTPGCNGTKGDRGFPGSSGLPGIQGFPGPPGLPGPKGDPGEVISSNQFGQKGDPGLP
GLPGVPGNPGPQGLPGPIGPTGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGETGLAG
PPGPPGQIGEQKRPTASEVQRGDKGDRGLPGEPGEPGLPGPPGPASGPAGSKGEPGEPGK
RGKPGKDGDPGPGGFPGQKGEPGQPGLAGRDGERGEKGDRGYPGPPGAVLSGPNFDRVGP
KGDKGFQGLPGQKGDRGLQGFTGPPGPPGLPGEGSAGIPGSPGFPGERGHKGDEGSPGIS
LPGPPGRPGQPGQSGPPGPPGPPGQIIDGGDCLPGAPGLPGLQGERGFPGESGQKGEKGE
TCVNCFVNGITIPGPPGPSGPQGLPGTPGFPGPKGDRGFPGSVGPSGGPGFPGPQGTPGN
PGLKGEPGDVISVGGLKGDKGDSGFPGAPGLPGLDGKPGRDGLQGPPGPKGFSGSQLVKG
ERGPPGQPGVPGLPGDRGPTGSPGFGPQGPPGEKGLQGVSGRSGLSGAPGQKGEPGQTLS
EKGAPGARGAPGDPGLPGGPGSPGQPGQPGFPGLPGTKGEPGLPGIGLPGPPGVKGYPGT
LGPAGIPGAPGRPGLDGLPGQPGVPGPKGEPGYGLPGPQGPPGFAGAKGLPGLKGDPGFP
GTPGQPGRSGFDGGPGPKGDPGRSGTPGARGPPGTPAYGLPGPAGPPGSPGPMGPPIIPG
FPGRNGEKGDPGPPGLDIPGLPGDRGNPGFPGSPGAVGPPGPLGTPGRDGQPGLPGPKGD
MGVMGTPGPVGNLGAPGPPGFPGPKGNDGFPGQPGGTGGPGPRGDTGEPGLPGPPGPSIS
LPLEQKGSKGDPGPPGLEGLPGQKGFAGMPGDPGSPGQDGRPGVPGPPGPKGDPGVPGQP
GAPGIPGQKGNMGEMGFPGPSGVKGSPGQPGRPGSPGSPGVPGFTGSKGDPGLPGYGVPG
SPGSKGDPGLPGSPGSFGNKGQPGAPGLPGLPGSQGPKGDSGLPGFQGPPGSPGPKGLDG
APGPPGLIGPSGRPGEPGRGGSPGLPGDKGQAGRDGIPGPAGLKGDQGLPGYGLPGNPGL
PGLPGPKGDVGPFGQAGSPGFPGQKGDPGFPGLPGTPGNIGPPGPPGLPQQGPKGNIGLP
GPPGRGGPPGPEGPRGPPGSGGTKGEKGLPGPFGQSGLPGLKGDRGFPGSLGPPGNPGRD
GLKGDIGLPGVPGFPGPKGTSGSPGPLGARGDPGDLGPPGPPGDPGVSPGPIVLKGDQGP
PGPPGLPGGRGLPGPPGLEGLPGQPGSPGDPGPEGPPGFSGPIGRKGDTGPSGQPGQRGF
PGPPGSDGPQGLPGIPGSVSAAHGFLITRHSQAVDVPFCPDGTNLIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTHEPMPMSMAPITGENI
KPFISRCAVCEAPAMVIAVHSQTIQLPSCPQNWDPLWIGYSFMMHTSAGAEGSGQALASP
GSCLESFRSAPFIECHGRGTCNYYGNSYSFWLATVDVSEMFRKPQAETLKAGNLRTRVSR
CVVCMKKT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaaaacgttaagagtctgcaaaacctcgtcgtgggtctgctattcataacc
ctatgcaccggggttctggattcggaagcagcggcttgccatggctgtgtatcgggatcg
aactgtgactgcagtggagtgaaaggagcgaagggggagagaggctttccaggactacag
ggccagccaggggtgccagggtttcctgggccggagggccctcttggaccgaggggagag
aagggcaatgatgggcctccaggaccggctggaccaaaaggaatcagaggtccaccaggg
cttcctggctttcctggaaccccagggattccaggtcttccaggacaggacggacctcca
ggaccgaggggaactccagggtgtaacgggacaaagggggaccgtggatttccaggaagc
tctggccttccggggatacaagggtttccaggtcctcccggtctaccaggtcccaagggg
gaccctggtgaagtcatctcatcaaaccaatttggacagaaaggagatcctggtttaccg
ggcctccccggtgtacccggaaacccaggacctcagggattgcctggtccgattggtcca
acgggcccccgtggttatgagggccgtcctgggcctcctggtccccctggacccaagggt
aacatgggtttgaacttccaaggacctaaaggagagaagggtgaaacgggtcttgcaggg
cctccggggccccctggacagatcggagaacagaagaggccgacggcctctgaggtgcag
agaggagataagggggatcggggacttcctggagagcctggtgaacctggcctcccaggg
cctcctggtcctgccagcggtccagcaggctcaaaaggagagccaggtgaacctggaaaa
agggggaagccaggtaaagatggagacccaggtccaggaggattcccgggtcagaaagga
gagccaggccaaccaggtctagcaggccgagatggcgagaggggtgaaaaaggagatcgt
ggctaccctgggcctccgggcgctgtgctgagtggaccgaacttcgacagagtggggccc
aaaggtgacaagggtttccaagggttgcccgggcagaaaggggaccgtggcttgcaaggt
ttcactggacctcccggaccgccagggttaccaggggaggggtctgctggtatacctgga
tcacctggttttcctggagaaaggggccataaaggagatgaggggtcgccaggtatctcc
ttacctggacccccaggtaggcctggacaaccaggtcagtctggacctcccgggccccca
ggacccccaggacaaataattgatggtggagactgcctcccaggagccccagggttgcct
gggctacagggagaacgtggcttccctggagaatcagggcagaaaggtgaaaagggtgag
acctgtgttaactgtttcgtcaatgggattaccatccctggacctcctggcccctctggt
ccccaaggattgccaggaacccctggattccctgggcccaaaggtgacagaggatttcca
ggaagcgttggtccgagcgggggtcctggttttcctgggcctcagggtacacctggaaac
ccaggactgaagggcgaacccggagatgttatttctgttggtggacttaagggcgataag
ggtgactcagggttcccaggtgcgcctggcttaccaggcctggatggaaaacctggaagg
gatggattgcaaggtccaccaggacccaaaggtttttctgggtctcagttggttaaaggt
gaacgtggacccccaggacagcctggagttccaggcctccctggagacaggggtccaact
ggctccccaggatttggtcctcagggtcctcctggtgagaaaggtcttcagggcgtttca
ggcagatcagggctttcgggtgcaccaggccagaaaggtgaaccgggtcaaactctgtcg
gagaaaggggctccaggtgctagaggagcccctggagatcctggtctgccaggcggtccg
ggttctcctggtcagccaggacagcctggtttcccagggttaccagggacaaagggtgaa
cctggactccctggaattggcttaccagggcctcctggagtcaaaggataccctgggact
cttggcccggctggaattcctggagctccaggtcgcccaggtttggatgggctgcccggt
cagccaggcgtcccagggcccaagggtgagcctggctatggtttaccaggaccccagggg
cctccaggatttgcaggtgcgaaaggactccctgggctaaagggtgatcccggattccct
gggacccctggccagcctgggagatcaggctttgatggaggacctggcccaaaaggtgat
cctggtcgttctggcacacctggagctcgtggccctccaggtacccctgcatatggcctt
ccagggcccgctggccctcctggcagtccaggacctatgggtcctcctatcatcccagga
ttccctggtaggaatggggagaagggtgaccctggacccccaggactggacatccctggt
ttacctggagacagggggaaccctggcttccctggatcaccaggtgctgtgggccctcct
ggtccccttggcacaccaggcagagatggacaacctgggctgcccggtccaaagggagat
atgggggtcatgggaacccctggacctgttggaaacttgggtgcccctggtccacctgga
ttccctggaccaaaaggcaacgacggctttcctggacagccagggggtacaggtggtcca
gggccaagaggagacacgggtgaacccgggctaccaggcccaccaggcccaagcatttcc
cttcccttggagcagaagggatcgaagggagatccaggtcccccaggcttggaaggtctg
ccaggacagaaaggctttgctgggatgcctggagaccctgggtcccccgggcaggatggg
cgacctggtgtgccaggacctccaggtccgaaaggtgaccctggggtaccaggtcagcca
ggagccccaggaataccagggcagaagggaaacatgggagagatgggattcccaggaccc
agcggagtgaaaggaagtccagggcagccaggccgacctggatcacctggttcgccaggt
gtccctgggtttacaggttctaagggtgaccctggtttaccaggatatggagtgccagga
agccctggctctaagggtgatccgggtcttccgggatcccctggaagctttggaaacaaa
ggccagccaggtgccccaggcctgccaggtctaccaggtagccaaggaccaaagggtgat
tccggactcccaggatttcaaggtccgccgggtagtcctggccccaagggtctggacgga
gccccaggacccccagggctcattgggccctctggccgacccggagaaccaggccgtggt
gggtcccctggactgcccggagacaaaggacaagcaggccgggacggcatccctggacca
gctggattgaagggagaccaaggactgcctggctatggcctccccggaaacccaggtctt
ccaggattaccaggtccaaagggagacgtgggcccttttggtcaggctggtagcccaggc
ttccctggacagaagggtgatccgggatttcctggcttgcctggaacccctggtaatatt
gggcctccaggtccccctggactacctcagcaagggcccaaaggtaacatagggctccca
ggccctccaggaagaggcggtcctccaggtcctgagggaccccgtggcccccctggcagt
ggaggcacgaagggggagaaggggctgcctggcccgtttggccagtctggtctgcccgga
ctgaaaggcgaccgcggattccctggttctttaggccctcctggcaatcctgggcgagat
ggattgaaaggagacattggactgcctggagtaccaggcttcccaggaccaaaggggacg
agtggctcccctggcccacttggcgctcgtggcgatccaggagatttaggtcctccaggg
ccccctggtgaccccggtgtgtctccaggccccattgtactgaaaggggaccaagggcca
ccagggcccccgggcctgccaggtgggcgtggcctccctggtcccccaggattggagggg
ctcccaggtcagccgggaagcccgggagatccaggccctgagggtccaccaggattctct
gggcccataggacgaaaaggagacactgggccttctggacagccaggtcaacgtgggttt
ccaggcccaccgggatcagacgggccccaggggcttcctggcatacccgggtctgtttca
gcagcccatggcttcctcatcacacgccacagtcaggccgtagatgtgcctttctgtcct
gacggcaccaacctgatctacgatggctactccctgttgtacgtgcagggcaacgagagg
gctcatggtcaggacttgggtacggcgggcagctgtctgcgccgattcagcaccatgccc
ttcatgttctgcaacatcaacaacgtctgcaacttcgcctcacgcaacgactactcgtac
tggctatccacgcatgagcccatgcccatgagcatggcgcccatcaccggcgagaatatc
aagcctttcatcagcagatgtgcggtctgtgaagcccctgccatggtgattgctgtgcac
agccagactatccagcttccctcctgcccacagaactgggacccgctgtggattggctat
tccttcatgatgcacactagtgctggggcagagggctcgggacaggccttggcctcccct
ggatcctgccttgagtcgttccgctctgcccccttcatcgagtgccacgggcggggcaca
tgcaattactacggcaactcctacagcttctggctggccacggtggacgtctctgaaatg
ttcaggaagccccaggcagaaacactgaaagcagggaacttgcgaacacgcgtgagccgc
tgcgtggtgtgtatgaagaaaacgtaa
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