Anguilla rostrata (American eel): 135254615
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Entry
135254615 CDS
T10705
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135254615 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135254615 (patl1)
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135254615 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
135254615 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
135254615
NCBI-ProteinID:
XP_064191005
LinkDB
All DBs
Position
5
Genome browser
AA seq
758 aa
AA seq
DB search
MFRFQSLDEDCTLEEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDERVRDV
VGGGGDVSSAPLPPAPRSIPPPSSLPPPGLEERGGGDLAESLARLILGTDPAIAGVGAAE
PDRVRMPLPTHQQPPPSTLPGPPHPLLGYQQHQHLLRRGTAPLQMNSHSIWENSMGFGPV
SVTPGLGTHMEDSPLMSIIKEVGLPKRPPQIRSDESRDLSERVPPPRSSSPVIGSPPVRA
VPIGTPPKQPMSHALNQQLHCPTAVHVRAPVQHRYPPPFPDRLSPNTLLNIANSPLCRPP
FSAGVGPVLSQIQRAQLLSSQVGGFPRGGPAPPLLPGGGGGFRPFFGQPPPRVGPHVPPN
HNIVRHNTTHLHPQHRRMLTQRLQSRGDRGGRVGDRRIRDPYSNLMTQREKDWVARIQMM
QLQSTDPYLDDYYYQNYYEKMEKRQERDRDSSRKEHTTKLITPQVAKLEHAYKPVQFAGS
LGKLTVSSVNNPRKMIDAVVTSRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEK
KFIQTPEEQREALLEQHKTHTLQLYNTLREREWDDRVSDEQCLMIMSVRKGKRLVSRLLP
FLPPPQAAAVVMAIARNMPALAKKDKQDQVLCWLVEPVAVVIQSLSSSALTDLLQELQGT
EGQLPRVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLNVPPSS
LSPPLFTPPNLLSLFSRYVDRQRLELLQEKLQISALSR
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtccctggatgaagactgcacgcttgaggaggaagaggggctggtg
gaagaggaagatgagatcgaccagttcaatgatgatacctttggagccggagcaatagat
gatgactggcaggaggaacatgcgcgtctggctgagttggatgagcgagtgcgggacgtg
gtggggggcggcggggacgtatcctctgcgcccctccctcctgcccccagaagcatcccc
cctccctcttccctgccccctccggggctggaggagagggggggcggggacttggccgaa
tctctcgcccggctcatcctggggacggaccccgccatcgctggggtgggcgcggccgag
cccgacagagtccgcatgcccctgcccacgcaccagcagccccctccctccaccctacca
ggccctccgcaccctctgcttggctaccaacaacaccagcacctgctgcggcgcgggacg
gcgccccttcagatgaactctcacagtatttgggagaacagtatgggctttgggcctgtc
agtgtcacccctggacttggtactcacatggaggacagcccgctcatgtccatcatcaag
gaggtgggtctgcccaagcgtcccccacaaatcagaagcgacgaaagccgggacctgtca
gagcgagtcccaccccctcgttcttcttcgcctgtgataggtagcccacctgtgagggcg
gtgcccattggaacccctcccaaacagccaatgagccatgcactcaatcaacagctccac
tgccccactgcagtacatgtaagagccccagtccagcatcgatacccccctcccttcccc
gaccgcctgtcccccaacaccttgctcaacatcgctaactctcccctctgcagacccccg
ttttcggccggagtgggccccgtgctgtcccagatccagcgcgcccagctgctcagctct
caggtggggggcttccccaggggtggtcctgctcctcccctcttgcctgggggtggtggg
gggttcaggccatttttcgggcagccccctcccagggttggaccccatgtccccccgaat
cacaatatagttcgccacaacaccacccacctccaccctcagcatcggagaatgctgact
cagaggctacagagcagaggtgacagagggggcagagttggcgacaggcggatcagggac
ccctacagtaacctgatgacgcagcgggagaaggactgggtggcccgcattcagatgatg
cagctgcagagcactgacccttacctggatgactactattaccagaattactacgagaag
atggagaagaggcaagagcgggatcgggacagcagccggaaggagcacactaccaaactc
atcactccgcaggtggccaaactggagcacgcctacaagccagtgcagtttgctggctcc
ctggggaagctgaccgtatctagtgtgaacaaccccaggaaaatgattgatgctgtagtg
accagccgaactgatgatgaggagaagagagagaagcaggtctggaacaagcgtagacag
atcctgtacaccgtggagaagatgtacagcctgctgttagaggtgcaggactttgagaaa
aagttcatccagacgccggaggagcagagggaagctctgctggagcagcacaagacgcac
accctgcagctgtacaacacgctgagagagagggagtgggacgacagagtgagcgacgag
cagtgtctgatgatcatgtccgtgaggaaagggaagaggctcgtctcccggctcctcccc
ttcctgcccccgccgcaggctgccgccgtcgtcatggcgatcgcccgaaacatgccggcg
ctggctaagaaggacaagcaagaccaggtgctgtgctggctggtggagccggtcgctgtg
gtcatccagtctctctccagctcggccctcacagacctgctgcaggagctccagggcacc
gaaggccagctcccccgtgtgctgcaaaacaagtttggcgtgacgctgctttacctgatt
ctgagcgagggcgagaggatgcagagctccgatcccaactgtcagctaatggacgacaat
cgatggacagagttggtgttctctgtgaccagggagctgttgaacgtccctccctcctct
ctctctcctccgctcttcacccctcccaacctcctctctctcttctctcgctacgtagac
cgacagcgcctggagctgctgcaggagaaactacagatctcggctctgtctaggtag
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