Anguilla rostrata (American eel): 135255800
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Entry
135255800 CDS
T10705
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135255800 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135255800 (edc4)
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135255800 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
135255800 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
135255800
NCBI-ProteinID:
XP_064193512
LinkDB
All DBs
Position
5:complement(59329219..59359422)
Genome browser
AA seq
1363 aa
AA seq
DB search
MASNSNIDIEDATQHLRDILKLDRPGNSGDAPPVEGQKKASFNGELNGLFGADLLGAGDR
VAAGETHNPELMDPQERQTILLSGDDSSTSIAISSNDVEIVASHDSSISSKARGSNKVKI
QPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANSYAMIRVLSLSAAERTLLKGFVGGVTD
LAFAHLDSTQLACMDEAGNLFVWQLTSRDGKILDEVVVHIRRPEDTPLNSNRRLIWCPFI
PEENEENPEDACQTLALLHEDRAEVWDLDILRANSSTWPVDATDLTDGFITVRGHSARIS
EGALSPDGTVLATASHDGYIKFWQIYIEGQDQPRCLHEWKPHSGKPLSCLLFCDNHKKQD
PDVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDPFNSSVMPSLKASLDLSADYLI
LSDVQRKVLYVMELRQDQEKGRAGFTAVSEFLLTHPVLSFGIQDVSRCRLRHTEVLPPEE
ESESMTTEGSQGPVESKAGVQIKLYCVHTKSLQDVQIWFQPQSGAGSTLVLPQATSQDDF
AFSDHLTDVSVEGLGSDKESGRSSQNDLQGMPALPAPADFLSPISESKPKLMTPDAFMTP
SASIPASPGSSASSLTVVTAMSSNSDSGGARGGDELIQSPKISLDSSSSTMTLSSTPSGS
SRTSTMLIPGLGDQLPVNNLQTLSSPNPPLSLDLQVIEPLLVPQSSPTRERSPDVISSAS
TAMSQDIPEIASETLQRGLGAASGASSLSSGAAAAAAGGAEPHADSMASAATALHLLSPR
NRNGSDPARLSLELGGAGEGERLRSTPSLLEAALSQESAAAAAACADGAVSQPWPAAPDI
TRETRNSLRDNSLVECCREDLKEKHKSSPYHRHTYSLPHNDSQDASAEQSDHDDEVASLA
SSTGNCGSRSSHRLPVKDWKVSPRASPKLKRKSKKDDGDSSQSRHPEHQMSPELQGELLM
LLRSQQRELAELQQSQLDLLHRLTGHMDSVQSSIMAHVEQAIIAQQEQDQRRMDRMVTEG
LERSRQVQETLSQQLSQTLTSTLSNRLDKVLRDEMKKTVPQTISKSLEPVTGQLSSTIAA
KLTAVEGTLKENVSKVVKSKNTTDAIGRAAADALQGPIQAAYKEAFQSIVLPVFEKGCQS
MFQQINDSFKQGTHEYIQQLESHLKNRKQREHDARDPLIGQLQQLVDSFQTSSDQLANSV
TASVRSEVQHQLHMIVGNLQDSILTQVQRIVKGEVSMAMKEQQAVVTSSIMQAMRSAAGT
PIPTAHLDYQAQQASILQLLQQGQLNQAFQQALSAADLNLVLYVCETIDSQQVFSQNPCP
LIQPVLLSLIQQLSTNLATRSELKIRYVRTSQTRTRTRARAHT
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaactcgaacatagacatagaggacgcgacgcagcaccttcgggacatcctg
aagttggaccgacccgggaatagcggcgatgcacccccggtagaggggcagaagaaggcg
tcgttcaacggcgagctgaatgggctgttcggagcagacctcctgggcgcgggagaccga
gtcgccgcgggtgaaactcacaatccggagctcatggatccgcaggaaagacagaccatc
cttctgtcaggtgacgacagctccacctccatcgccatctcgtccaatgatgtggagatt
gtggccagccatgactccagcatcagcagcaaggccaggggcagcaacaaggtcaaaatc
cagcccgtggcgaagtacgactgggaacacaagtattactatggcaacctgatcgccgtg
tccaacgcctacctggcgtacgccatcagaggtgccaacagctacgccatgatccgcgtg
ctgagcctgagcgcggccgaacgcacgctgctcaagggcttcgtgggcggagtcaccgac
ctggccttcgcgcacctggactccacccagctggcctgcatggacgaggccggcaacctc
ttcgtctggcagctcaccagccgcgacggcaagatccttgatgaggtcgtcgtgcacatc
cggcggccggaggacacgcccctcaactccaaccggaggctgatctggtgccccttcatc
ccggaggagaacgaggagaacccggaggacgcctgccagactctggccctgctccacgag
gacagggcggaggtgtgggatttggacatcctcagagccaacagcagcacctggcccgtg
gacgccacggacctgacagacggcttcatcaccgtcaggggccactctgcgcgcatcagt
gaaggggccctgtctccagacgggacggtcctggccacagccagtcacgacggctacatc
aagttctggcaaatctacatcgaaggacaggaccagcccaggtgcctgcacgagtggaag
ccccacagcgggaagcctttgtcctgcctcctgttctgcgacaaccacaagaagcaggac
ccggacgttcctttctggcggttcctgatcaccggagcggatcagaaccgcgagctgaag
atgtggtgcacagtgtcatggacctgcctgcagaccgtcaggttctccccagaccccttc
aactcgtccgtgatgcccagcctgaaggccagcctggacctgtcggccgattacctcatc
ctcagtgacgtgcagaggaaggtcctgtacgtgatggagcttcggcaggaccaggagaag
gggcgagccgggttcacggccgtgtccgagttcctgctcacgcaccccgtgctcagcttc
ggcatccaggacgtgagccgctgccgcctgcgccacaccgaagtgcttccccccgaggag
gagagcgagagcatgaccacagaaggaagtcagggcccagtggagtctaaagcaggcgtc
cagatcaagctctactgcgtccacacaaagtccctccaggacgtgcagatctggttccag
ccacagtcgggcgcagggagcaccctggtcctgccgcaggccacctcccaggacgacttt
gctttctcagatcacctgacggacgtgagcgtggagggcctgggctcggataaggagtcg
ggccgcagttcccagaatgacctgcaggggatgccggccctgccggccccggctgacttc
ctgtcccccatcagcgagtccaagcccaaactcatgacccccgacgccttcatgaccccc
agtgcttcgatcccagcctctcccggcagcagtgccagcagtctcactgtggtgacggcc
atgagcagcaactcagacagcggcggggccaggggcggagacgagctgatccagagcccc
aaaatctccctggattccagcagcagcaccatgacgctgagctccaccccctccggcagc
tcccgcaccagcaccatgctgatccccggcctgggagaccagctgcctgtcaataacctg
cagacgctgtcctctccgaacccgcccctctcgctggacctgcaggtgatcgagccgctc
ctcgttccccagtcctcccccacccgggagcgctctccggacgtcatctcctccgcctcc
accgccatgtcccaggacatccccgagatcgcctcggagacgctgcagcgcgggctgggc
gcggcgtcgggcgcctcgtcgctgtcgtcgggcgcggcggcggcggcggcggggggggcg
gagcctcacgcggacagcatggcgtcggcggcgaccgccctccacctgctctcgccccgg
aaccggaacggctcggacccggcccgcctgtcgctggagctgggcggcgccggcgagggc
gagcgcctccgctccaccccctccctgctggaggccgccctgtcgcaggagagcgcagcc
gccgcagccgcctgcgcagacggcgccgtcagccagccctggcccgccgcccccgacatc
acccgggaaacacgcaacagcctgagagacaacagcctggtggagtgctgcagggaggat
ttgaaggagaagcacaagtcttccccctaccacagacacacctacagcctgccccacaac
gacagccaggacgccagcgcggagcagagtgaccatgacgacgaggtggcgagtttggcg
tcctccacggggaactgcggctccaggtcgtcccaccgcctgcccgtgaaggactggaag
gtctcgccccgcgcctcccccaaactgaagaggaagagcaaaaaggacgatggagattcg
tcgcagtcccggcaccccgaacaccagatgagcccggagctgcagggggagctgctcatg
ctcctgaggagccagcagagggagctggccgagctgcagcagagccagctggacctgctg
caccggctcaccggacacatggactccgtgcagagctccatcatggcccacgtggagcag
gccatcatcgcccagcaggagcaggaccagcgcaggatggaccgcatggtcaccgagggg
ctggagcgcagccggcaggtgcaggagaccctctcccagcagctctcccaaaccctcacc
agcacgctgtccaaccgcctggacaaggtgctccgcgacgagatgaagaagaccgtcccc
cagacgatctccaagagcctggagccggtgacgggtcagctgagcagcaccatcgccgcc
aagctgaccgccgtggaggggacgctcaaggagaacgtctccaaggtggtcaagagcaag
aacacgaccgacgcgattggccgggcggcggccgacgccctccagggccccatccaggcg
gcctataaggaggcgtttcagagcatcgtcctgccggtgttcgagaagggctgccagtcc
atgttccagcagatcaacgacagcttcaaacagggcacgcacgagtacatccagcagctg
gagagccacctgaagaacaggaagcagcgggagcacgacgcgcgggaccctctgattggc
cagctgcagcagctggtggactccttccagacctccagcgaccagctggccaatagcgtg
actgcgagcgtgcgctcggaggtccagcaccagctgcacatgatcgtggggaacctgcag
gactccatcctgacgcaggtgcagcgcatcgtgaagggggaggtgagcatggccatgaag
gagcagcaggcggtggtcacctccagcatcatgcaggccatgcggtctgccgcgggcacg
cccatccccaccgcccacctggactaccaggcccagcaggccagcatcctgcagctgctg
cagcagggccagctcaaccaggccttccagcaggctctctcagcggctgatctgaacctg
gttctgtacgtgtgcgagaccatcgactcccagcaggtgttcagccagaacccctgcccc
ctcatccagcccgtcctgctgtccctgatccagcagctctccaccaacctggccacccgc
tccgagctcaagatcaggtacgtgcgcacgtcacagacacgcacacgcacacgcgcacgt
gcacacacataa
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