Anguilla rostrata (American eel): 135256531
Help
Entry
135256531 CDS
T10705
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135256531 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135256531 (smg7)
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135256531 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
135256531 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
135256531
NCBI-ProteinID:
XP_064194454
LinkDB
All DBs
Position
6:11926305..11954647
Genome browser
AA seq
1193 aa
AA seq
DB search
MRRLGSQLPYALPSHTKSKLCLVFCPEVDFFRQAEALKADMTDSKLGPAEVWTSRQALQD
LYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAA
SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQNSSGSIVKPQPSSCSYICQHCLVHL
GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP
FPAASTNLQKALSKALESRDEVKTKWSVSDFIKAFIKFHGHVYLSKSLEKLNGLREKLEE
QFQKLILQKAFSSQQLVHITVINLFELHHLRDFSSESDDQSFSPEEQMSWIQQLGLFMSF
LGVMCSRALLNRNRAEILGECPLPAIKVSLEWLRLRPTVFHESAVDKRQYIWPWLVSILN
SFQPREEDVSCTAVNPLPEEFELQGFLALRPALRTLDFSQGHQGIAVDKEGLPVRARHQR
LISLGKWVADNQPGLIQCRIEDGLLLFITEIPEIAVEEPPERDGPVLQESSNGEQTTHEG
SPGLKSVLSAGKNQNSGPESGERPVVTFKENIKPREPSRNHHPKESGKERRDFGKGNGAP
GRSEQKKDKKKNEAKKSCHEKTTDIGKQVKAQSEMRKTPVSEARKTPVTQTQTTSSSQFI
PIHHPGAFPPLPSRPGFPPPAYVIPPPVAFSVSPGFTFSAGVSVPGPFLQTASHPQSGAQ
VQAGKPSHIPYSQQRPSGPGALNQQQQPQPPQQATQPTAQPSAQLQIQALSQQQQQSPTK
PGPAQLGKSPPHHPGMQQQYMQVQEQSAQLWNQHQTAASGVQKMSMQMPVKQPFFLQPQD
PLKLFEHPLPTVPLQPPPSATMDKKMKFPEVKVQDFYWDPPYRMTDSRSMMSHQMANERL
VKRQAGVFCPGQDGSQRGPSYEDNKSSPLLPPALLKSLADFEEEEELAFAKPHDFYQALA
SPLSSAPGPNMFLPNQSRLERAPEQTSSLLPLSGFPLQENYQNNSIFSEAYGKNMTPNPK
PDVPLGHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHSSIP
FSTFGPIGTPDSRERRIADRWKVEKNAAMCGFGLDYLPAASSAAETSWHQGSNPSNTWAA
QESPMEDSSTVLLDSLKSIWSSSMMQPGPSALEQLLMQQQKQQRGHGPMNPPH
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgagacggctgggtagccagctaccttacgccttgccaagtcacacgaaaagcaagctc
tgtttggtcttttgtccagaagtggattttttcaggcaggcagaggccctgaaggcggat
atgactgattcaaagctgggtccggcagaggtgtggacatccagacaggccctgcaggac
ctgtaccagaagatgctggtgacagacctggagtacgccctggacaaaaaagtggaacaa
gacctctggaaccacgcttttaagaaccagataaccacattacagagtcaggccaagaac
agagccaaccccaacaggagcgaggtgcaggccaacctgtcccttttcctcgaggcagct
agtggcttctatacgcagttattgcaggagctgtgcaccgtgtttaacgtggacttgccc
tgccgggtgaaatcctctcagctgggaataatcagcaataagcagaacagcagcggctcc
atagtgaagccacagcccagctcctgctcctacatctgccagcactgtctcgttcacctg
ggagacattgcacgttaccgcaaccaaaccagccaggcagagtcctattacagacatgca
gctcagcttgtaccatctaatggtcaaccttacaatcagctagcgatcttggcctcctct
aaaggggaccacctcaccaccatattctactactgcaggagcattgctgtcaagttcccc
tttccggcagcttctaccaacttgcagaaagcactctcgaaagctctagagagccgtgac
gaggtcaaaacaaagtggagcgtgtctgatttcatcaaggccttcatcaagttccatggc
catgtctacttaagcaagagcctggagaaactcaacggtctgagagagaagctggaggag
cagtttcagaagctgattcttcagaaggcattcagctcccagcagctggtccacatcacg
gtgatcaacctgtttgagctgcatcacctgagagacttcagcagtgagtcggacgatcag
agcttcagtcccgaagagcagatgagctggatccagcagctcgggctgttcatgtctttc
ctgggcgtgatgtgcagccgggcgttgctcaacaggaaccgggcggagattttgggcgag
tgccctttgcctgccatcaaggtgtccctggagtggctccgcctccgtccaaccgtcttc
cacgagagcgccgtggacaagagacagtacatttggccctggctggtctccattctcaac
agcttccagccgagggaggaggacgtgtcctgcacagcagtgaatcccctcccggaggag
tttgagctccagggctttctggctctgagaccagctctgcggacgctggacttttcccaa
ggccaccagggcatcgccgtggataaggaggggctcccggtgcgagctcgtcaccagagg
ctcatcagcctggggaagtgggtggcagataaccagcctgggctgatccagtgccgtatt
gaggacgggctgctgctgttcataaccgagatccccgagatagcagtggaggagccccca
gagcgggacgggcccgtgctccaggagtcctccaacggcgagcagacgacccacgagggc
agccccggcctcaagtccgtcctgtccgccggaaagaaccagaacagcgggccggagagc
ggcgagcgcccggtggtcaccttcaaggagaacatcaaaccgcgcgagcccagccggaac
caccacccgaaggagagcgggaaggagaggagggacttcggcaagggcaacggcgccccc
ggcaggagcgaacagaaaaaagacaagaagaagaacgaagccaagaagagctgccatgag
aaaaccacggacatcggcaaacaggtgaaggcgcagtctgaaatgaggaagactccagtc
tcagaggcaaggaagactccggtcactcagacacagaccaccagctcctcccagtttatc
ccgattcatcaccctggagccttccctcccctgcccagccggcccgggttcccgcccccg
gcgtatgtgatcccgccccccgtggcgttctcagtgagccctggcttcaccttctcggcg
ggtgtgtctgtccccgggcccttcctgcagacggcctcccacccccagagcggtgcccag
gtgcaggctgggaaaccgtcgcacattccctacagccagcagcggccctcggggcccggg
gccctcaaccagcagcagcagccacagccacctcagcaggccacgcagccgactgcgcag
ccatctgcgcagctgcagatccaggccctgtcccagcagcagcagcagtcgcccaccaag
cctgggccagctcagctgggcaagagtccacctcaccacccaggcatgcaacagcagtac
atgcaggtacaggagcagtctgcgcagctgtggaaccagcaccagactgcggcctccggt
gtgcagaagatgtccatgcagatgccggtcaagcagcccttcttcctgcagccccaggac
ccgctgaagctgttcgagcaccccctccccaccgtgcccctgcagcccccgccctccgcc
accatggacaagaagatgaagttccccgaggtcaaagtccaggacttctactgggacccg
ccctaccgtatgacggacagccggtccatgatgagccaccagatggccaacgagaggctg
gtgaagcggcaggccggagtcttctgccccgggcaggacggcagccagagggggccgtcc
tacgaggacaacaagagctcccctctcctgcctcccgccttgttaaaaagtctagcagac
tttgaggaggaggaagagctggcctttgctaagcctcatgatttctaccaggccctggcc
agccctcttagctctgctcctggaccaaacatgtttttgccaaaccagtcaagactggaa
agagcccctgagcagacgtcctctctcctgccactgtctggatttccccttcaggagaac
tatcaaaacaacagcatttttagtgaagcttacggcaaaaatatgacccctaaccccaag
cctgatgttcctctggggcaccaagagccatccctctactctctgtttgagggaactccg
tggtccccttctcttccggccagctcagaccactccacgccggccagccagtcccctcat
tcctccaaccccagcagcctgccctcgtctccgcccacacacaaccacagctccatcccc
ttctccactttcggccccatcggcacccctgacagccgcgagcgccgcatagctgaccgc
tggaaagtggagaagaatgcagcgatgtgtgggtttgggttggactacttgcctgctgcc
tcctcagccgctgagacgagctggcaccaaggcagcaatcccagcaacacgtgggcagcg
caggaatcgcccatggaggactcttctactgtactcctggacagcctgaagtcgatctgg
tcgagctccatgatgcagccgggcccgtcggcgctggagcagctcctcatgcagcagcag
aagcagcagaggggccacggccccatgaacccgccgcactga
DBGET
integrated database retrieval system
