KEGG   Anguilla rostrata (American eel): 135257597
Entry
135257597         CDS       T10705                                 
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
  KO
K12816  pre-mRNA-processing factor 17
Organism
arot  Anguilla rostrata (American eel)
Pathway
arot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:arot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135257597 (cdc40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:arot03041]
    135257597 (cdc40)
Spliceosome [BR:arot03041]
 Complex C
  Other components
   Step II factors
    135257597 (cdc40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_NWD2_C WD_LRWD1 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 135257597
NCBI-ProteinID: XP_064196542
LinkDB
Position
6:52032306..52063998
AA seq 578 aa
MSVGVASLVSYGTDSDSDNDAETNIKPEKTDPDAIAHLLPLSSGKKTSLTVLNSAPEVAV
KEDVMTGTHLDPSLKEVTFNPTYETMFAPEFGPVNPFKTQQMAAPRNMLSGYAEAAHVND
FMFEQQRRTFSTFGYALDPSVDTSQVSSSSYIGAVDEAEKNKGLTVFEAGAKKSEKRKKL
KGGDASEIDSFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKKGKNEEDAPAEEKTVL
HVKDMYDYQGRSYLHIPQDVGMNLRTADIPDKCYLPKKQLHVWSGHTKGVSAIRLFPLSG
HLLLSSSMDCKIKLWEVYKDRRCIRTFIGHSKAVRDICFNNTGTQFLSAAYDRYLKLWDT
ETGKCISRFTNRKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDVRTGEVVQEYDRHLGAV
NTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSM
DNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTK
LYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq 1737 nt   +upstreamnt  +downstreamnt
atgtcggtcggcgtggcgtctcttgtatcgtacggaactgattcagactcggataatgat
gccgagacgaatataaaaccagaaaagacagacccagacgcaatcgctcatcttcttcct
ctaagttctggaaaaaagacttcattaacggtcctaaattcagctccagaggtcgcagta
aaggaagatgtgatgaccggaactcacctggacccctcgctaaaggaggtcaccttcaat
ccaacatacgagaccatgttcgccccagagtttggcccggtcaacccattcaaaacccag
cagatggcagctcccagaaacatgctgtcggggtacgctgaggcagctcatgtcaacgac
tttatgtttgaacagcagcggcggacgttttctaccttcggctacgcgctcgatccgtcc
gtggacaccagccaggtctcctccagcagctacatcggagcggtcgatgaggccgaaaag
aacaaaggactgaccgtcttcgaggccggcgcaaagaaatcggagaagaggaaaaagctg
aaagggggcgacgcttccgaaatcgacagcttcctgggaccctgggccaagtacgtggac
gagaaggaggtggccaagccctcagaagaggagcagaaggagctggacgagatcaccgcc
aaacgacagaagaaagggaagaacgaggaggacgccccagcggaggagaagaccgtcctc
cacgtcaaggacatgtacgactaccagggccggtcgtacctccacatcccgcaggacgtg
gggatgaacctgcgcacggccgacatcccggacaagtgctacctgcccaaaaaacagctg
cacgtctggtccgggcacaccaagggcgtcagtgccatacgtctgtttcctctttctggc
cacctgctgctgtcctcttccatggactgcaaaatcaagctgtgggaggtgtataaagat
cgaaggtgcatacggacgtttatcggacacagtaaggccgtgcgggacatctgttttaat
aacactggaactcagttcctcagcgccgcctatgaccgctacctgaagctgtgggacacg
gagacagggaagtgcatctcgcgattcaccaataggaaagtgccgtactgcgtcaagttc
aacccggacgaggacaagcagagcctgttcgtggcggggatgtccgataagaaaatcgtc
cagtgggacgtccggaccggggaggtggtccaggagtacgacagacatctgggggccgtc
aacaccatcaccttcgtggacgaaaacagacgcttcgtcagcacgtccgacgacaagagt
ctgcgagtttgggaatgggacattcctgtggacttcaagtacatcgccgagcccagtatg
cactccatgcccgctgtgaccctgtcaccaaacgggaagtggctggcctgccagtccatg
gataaccagatcctgatcttcggggcgcagaaccgcttccggctcaacaagaagaagatc
ttcaagggtcacatggtggcgggctacgcctgccaggtggacttctcccccgacatgagc
tacgtggtgtcgggcgacgcggacgggaagctgaacatctgggactggaagaccaccaag
ctgtaccaccgcatcaaggcccacgacaaggtgtgcatcagcgccctgtggcacccgcac
gagacctccaaggtcatcacctgcggctgggacggacagatcaagctgtgggactag

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