Anguilla rostrata (American eel): 135257919
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Entry
135257919 CDS
T10705
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03013
Nucleocytoplasmic transport
arot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135257919
03015 mRNA surveillance pathway
135257919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135257919
Enzymes [BR:
arot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135257919
5.6.2.5 RNA 5'-3' helicase
135257919
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135257919
mRNA cycle factors
Common to processing body (P body) and stress granule
135257919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
135257919
NCBI-ProteinID:
XP_064197206
LinkDB
All DBs
Position
6:1891351..1909789
Genome browser
AA seq
1086 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVIV
TDGLLQNGGLDDAVSKSSQLLAELNFEEDEEDTYYTKALPVHACSYCGIQDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVALHKDGPLGETVLECYNCGCRAPAIRAGALA
ASQLTWRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVIK
VPDNYGDEIAIELRSSMGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIY
HKLLGHEVEDVVIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS
ATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALH
NQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRAAERELLMNADVICGTCVGAGD
PRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQ
SLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIRKGFDFQWPQP
DKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSY
LVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVA
LTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQRVLVEGPLNNLRESLMQFSKPRKLVNA
MNPGARFMSTAMYDAREALIPGSVYDRSTTARPANMYFQTHDQMGMIGAGPNPLAALNFP
IPFNLVMPPMPPPSHLGMSNGPAAGRGIMKGKVGRGGRQRSRGMGNHGNSQGSQDMASQS
GPLTQGFISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQDSTYQGERAYQHGV
TGLSQY
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccaagctcacagactctcaccttcctggacaccgaggaa
gcggagctgctcggagctgatacccagggatcggagtacgagtttaccgacttcactctg
cccagccagacccaaacccagggccatacgcagagtcagctggacaaccaggttatcgtt
actgacgggcttctgcagaacggcggtcttgacgatgcggtctccaagagcagccagctc
ctggccgagctcaacttcgaggaggatgaggaggacacgtattacaccaaggctctcccc
gtgcacgcctgcagctactgtggaatccaggaccctgcatgtgtggtctactgtaacacc
agtaagaagtggttctgcaacggtcggggaaacacctctggcagccacattgtgaaccac
ctggtcagggccaagtgtaaggaggtggcgctgcacaaggacgggccgctgggcgagact
gtgctggagtgctacaactgcggctgccgagcacccgccatccgtgctggtgctctcgcc
gcaagccagctcacctggcggcagccgtgtgccagtcagagcagtctgaaggacattaac
tgggacagctcgcagtggcagccgctgatccaggaccgctgcttcctgtcctggctggtg
aagatcccgtctgagcaggagcagctgagggcccgccagatcaccgcccagcagatcaac
aagctggaggagctctggaaggagaaccccggcgccacgctggaggacctggagaagccg
ggcgtggacgaggagccgcagcacgtgctgctacgctacgaggacgcctaccagtaccag
aacatcttcggcccgctcgtcaagctggaggccgactacgacaagaagctcaaggagtcc
cagacccaggacaatataactgtccgctgggacctgggtctgaataaaaaaaggatcgct
tatttcacacttcccaagacggactcaggtgacatgcggctgatgcagggggatgagatc
tgtctgaggtacaaaggagacctggctcctctgtggaagggcatcggccacgtcatcaaa
gttccagataactacggggacgagatcgccatcgagctgcggagcagcatgggcgccccc
gtggaggtcccccacaacttccaggtggattttgtgtggaagtccacctccttcgacagg
atgcagagtgcactgaagacctttgctgtggatgagacctcggtctctgggtacatctac
cacaagctgctggggcacgaggtggaggacgtggtgatcaagtgccaactgcccaaacgc
ttcactgcccacggcctgcccgacctcaaccactcccaggtgtacgctgtgaagacggtg
ctgcagagacccctcagtctcatccagggaccccctggaacggggaagaccgtcacctcg
gcaaccatcgtataccacctggcccggcagggaaacggccccgtgctggtttgcgctccc
agtaacatcgcggtggaccagctgactgagaagatccaccagacgggcctgaaggtggtg
cgtctctgcgccaagagccgagaggccatcgactcgcccgtctccttcctggccctgcac
aaccagatccgcaacatggacagcatgccggagctgcagaagctgcagcagctgaaggac
gagacgggcgagctgtcgtctgccgacgagaagcggtaccgagcgctgaagcgcgccgcc
gagcgggagctgctcatgaacgcggacgtgatctgcgggacgtgtgtgggcgcgggggac
ccccgcctggccaagatgcagttccgctccatcctgatcgacgagagcacgcaggccacc
gagcccgagtgcatggtgcccgtcgtcctgggagccaaacagctcatcctggtgggggat
cactgccagctgggcccggtggtcatgtgtaagaaggcggccaaggcgggcctgtcccag
tccctgttcgagcggctggtggttctgggcatccggcccatccgtctgcaggtccagtac
cgcatgcaccccgccctcagcgccttcccctccaacatcttctacgagggctccctgcag
aacggggtgaccgccgccgaccgcatcaggaagggctttgacttccagtggccgcagccg
gacaagcccatgttcttctacgtgactcagggccaggaggagatcgccagctccggaacg
tcctatttaaacaggacggaggcggcgaacgtggagaagatcaccacgcggctgttgaag
gccggagcgaagcccgaccagatcggcatcatcacgccgtacgagggccagcgctcctac
ctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaagtggag
attgccagtgtggatgcattccagggcagagagaaagatttcatcatcctgtcctgtgtc
agagccaacgagcaccagggcatcggcttcctcaatgacccgcgccgcctgaacgtggcc
ctcacccgagccaggtacggggtgatcattgtggggaaccccaaggccctgtccaagcag
ccgctctggaaccacctgctgaactactacaaggagcagagggtcctggtggaggggccg
ctcaacaacctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaacgcc
atgaaccccggcgcacgcttcatgagcactgccatgtatgacgccagagaggccctgatc
cccggctctgtatatgaccgcagcaccacagcgcgcccggcgaacatgtacttccagacg
cacgaccagatgggcatgatcggggcggggcccaacccgctggccgccctgaacttcccc
atccccttcaacctggtgatgccccccatgcccccgcccagccacctgggcatgagcaac
ggccctgccgcagggcgtggcatcatgaaggggaaggtggggcgtggcgggcggcagcgg
agccgtggcatgggtaaccacggtaacagccagggcagccaggacatggcgtcccagtcg
ggccccctcacccagggcttcatctccatgagccagccgtcccagatgagccagcccggc
ctctctcagcccgagctgtcgcaggacagctatctgggcgacgagttcaagtcccaaatg
gatgtggctttgtcccaggactccacttaccagggcgagcgtgcgtaccaacacggagtg
acgggactgtcacagtactaa
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