Anguilla rostrata (American eel): 135257931
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Entry
135257931 CDS
T10705
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04518
Integrin signaling
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135257931
04518 Integrin signaling
135257931
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135257931
09142 Cell motility
04820 Cytoskeleton in muscle cells
135257931
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135257931
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135257931
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135257931
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135257931
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135257931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135257931
NCBI-ProteinID:
XP_064197220
LinkDB
All DBs
Position
6:complement(3665977..3701264)
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AA seq
1627 aa
AA seq
DB search
MAGARRSAGRISWCHLTLWWFVLFQLSQRRADGGELLEPCRGRDCSVCQCFPAKGSQGLP
GPPGCHGRQGPGGPPGLQGPQGEKGRAGVSGDPGEEGEDGDVGMTGVPGFPGVDGVPGHP
GAGGLRGLPGRDGCNTSRGDPGVPGFSGAHGRPGMAGHPGVKGQKGDPIYATASAGPPGD
AGQKGYPGVPGQHGVTGPRGPPGWSGPEGLQGVPGVPGTRGAHGDTGRSLPGQKGDEGDQ
GIQGPPGRFEIVEPPIETYQKGERGEQGRKGDCGVSGTDGACSPPGEKGEKGVIGLPGPR
GFPGPQGPPGYPGSQGPSGNAGLPGLIGNLGPKGYIGDPGPKGRPTFQYIDQNGDAGSIG
STGPPGQVGEPGDPGWIGLPGLPGQSLRGSPGRPGGPGFRGAKGVKGDPGRSYTVPIPGP
PGLPGTPGAKGPPGPPGPPGYACLPGQPGDEGDQGPPGAPGEKGKRGCAGECFCEEDGAP
GPVGPRGQPGQPGVPGREGNRGDPGPRGDAGGPGHHGNPGFPGFLGSKGQKGEPYVAHIK
GVKGEVGFPGPRGTPGLRGETGEDGAPGFPGDPGAPGDGHSGLLGDRGYPGPDGFKGPPG
PAGPPGPGIAGPVGVPGPQGDPGPPGKTGLQGTKGVKGDTLPCINPEPGPPGPQGDPGPA
GDPGVPGLPGFPGHSGSAGPKGRRGDPGYPGVTTGVRGVRGDPGHPGRPGRAFPKGHLGP
KPLLRGNFFGCWPPLCCGVSSGPRGQPGRGGRKGDQGERGDPGLTGPPSPCPCPCTDEPG
PPGQQGPPGDKGSPVGYPGEKGMLGEVGQPGRVRKGPSGDLGPPGPPGHPGPPGPPGTSG
DPGNLGQRGAKGNRGPPGNTGSPLPGRPGPIGRQGRRGEPGINGPAGPLGPTGPKGRKGE
QGQPGKPGSRNMFKGVKGDQSRGPQGFTGPRGQKGEPGSSGQSGQDGLPGFAGSPGQPGI
PGAGPPGLPGHPGVPGGLGCNGSLGFPGDQGDLGHSGPPGPPGPFGYSGMKGDIGDSVNN
PGPPGLPGPPGDGGKPGGAGLKGDRGDPGFSGLTGNRGGPGPKACPGPPGPPGPPGFPGL
TGAQGYAGPAGPPGPSGPPGPPGNPGPSGAPGPPGIAGLDGLRGVKGERGSRGSGEWGPR
GPQGFPGDQGPTGSPGPKGTSLWGPKGQRGREGSPGEPGLPGDAGVPGRDCYDVTHGPPG
EPGNPGRPGQPGPPGVIGLPGTVLPFRGEIGDPGLPGRPGPKGEAGPRGLPGSPGFPGPP
GSKGAKGLMGMMGIPGPGGIPGPAGPPGCRGDKGMTGEPGAKGPPGDLVNSDPFPRPGSL
GPPGPPGPPGFPGNPGPSGEEGPAGRKGQPGSPGLPGTVGTPGPAGVPGEPGIDGVRGFA
GPQGAPGPPGEQGPPGTSRTYSHGFLLVIHSQSEEIPVCPVDMVTMWNGYSLLYLEGQEK
AHTQDLGQAGSCLRVFSTMPFSYCNVASCDYAGRNDKSYWLSTTAAAPAAPASGAEIRRH
VSRCAVCEAPAPAVAVHSQDGDTPPCPPRWRSLWAGYSFLMHTGSGDEGGGQSLTSAGSC
LKDFRSQPFIECQGPRGTCHYFSSAYSFWLTRVGVAEQFSPAPAAGTLKEAWQQRQTTSR
CNVCMKE
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atggctggggcgaggagaagcgccggccgcatcagctggtgtcacctgaccctgtggtgg
tttgtactttttcagctctcccagcgaagggccgatgggggagagttgctggaaccctgc
cgtgggagagactgctctgtgtgtcaatgtttcccggcgaaaggatctcaaggtttgccg
ggacccccgggttgccatggtcgacaggggcctgggggcccaccagggctccaggggcca
cagggagaaaaaggaagagcaggtgtcagtggtgatcctggggaagaaggggaagacggt
gacgtgggcatgactggggtccctgggtttcctggagtcgacggcgttccaggtcacccc
ggggctgggggtcttcggggtctccccggacgggacggctgcaacacgtcgagaggggac
cccggtgtccctgggttttcgggggcgcacgggcgtccagggatggcgggacatccaggg
gtgaaaggtcagaagggggatcccatctatgccacagcctccgcaggccctccgggtgat
gctggacagaagggatatcctggtgtgcctgggcaacatggtgttactggtcccaggggt
ccacctggctggtcaggaccagaggggctgcagggagtccctggtgtgcctggaacaaga
ggagcgcatggtgacacaggccggtcactgcctgggcagaagggtgatgagggagatcag
gggatccaaggtcctcctggacgctttgagatcgtggagcccccaatcgagacataccaa
aaaggagaaaggggggagcaaggcagaaagggagattgtggagtcagtggtactgacgga
gcatgttcaccccctggagagaagggagagaagggagtcatcgggcttcctggacctcgg
ggatttcctggcccccagggtccacctggctaccccggatcacagggaccttctgggaac
gccggacttcctggcctgattggcaacctgggcccaaagggctacataggagacccagga
ccaaagggtagaccaacctttcagtacatcgatcaaaatggggatgcaggaagtattggc
agcactggacctccaggacaagtgggggagccaggggaccctgggtggattggcctccca
ggactaccagggcagtccctcagaggttcaccaggccggccaggtggcccagggttccgg
ggcgcaaagggggtgaagggggaccccgggaggtcctacacggtccccataccgggaccg
cctggcctaccggggaccccaggggccaagggacctcccggtcctccaggacccccaggg
tatgcctgcctcccaggtcagcctggagatgaaggagaccaaggcccacctggagctccg
ggggaaaaaggaaagagaggctgtgcaggggagtgtttttgtgaggaggacggtgcccca
ggccctgtgggccctcgggggcagccagggcagcccggggtgcctggcagagagggcaat
aggggagatcctggcccccgcggggacgcaggaggacccggacaccatggaaatccaggg
ttcccaggttttctggggtcaaaaggtcagaaaggggaaccctatgtggcacacattaaa
ggggtgaaaggtgaggtgggctttcccggtcccaggggcacccccggtctcaggggagaa
acaggagaagatggagctcctggtttcccaggggaccccggagcaccgggtgacggtcac
tcagggttgctgggtgacagagggtacccaggaccagatgggttcaaaggccccccagga
cccgccggaccgccaggccctgggattgcgggcccggtgggggtgccgggtccccaggga
gatccgggccccccggggaagacagggctccagggaacaaaaggcgtcaaaggtgacaca
ctgccatgtataaacccggaacccggcccaccaggaccgcagggtgaccctgggccagcc
ggtgatccgggcgttccaggccttccaggttttccgggacattccggttctgccggccct
aagggaaggagaggcgatcctgggtacccaggagtaaccacaggggtaagaggggttcga
ggtgatccaggacacccaggccgtcctgggcgagccttcccaaagggacacctgggcccc
aaacctttactgagggggaatttttttgggtgctggccacccctgtgctgtggcgtctcc
tcaggaccccgaggacagcccggcagagggggtcggaaaggggaccagggagagaggggg
gacccaggcctgacaggtccgcccagcccctgcccatgcccctgtaccgatgaacctggg
cccccaggccagcagggcccccccggggacaaaggctccccagtaggttatcctggagag
aaaggcatgctgggagaggtcggccagcctggcagagtcaggaaggggccttctggtgac
ttgggtcctccgggaccacctgggcaccctggacctcccggccccccaggaacctcgggg
gaccccggaaatctggggcaacgcggggcgaaaggtaaccgcggtccccctggcaacacc
ggatctcctttacctggaaggccaggccccatcggacggcaaggaaggagaggggagcca
ggcatcaatggccctgctgggccacttggacccacggggccgaaagggagaaaaggggaa
caaggccaacctgggaagcctggatccaggaacatgttcaaaggggtaaagggggaccag
tcgcggggaccacagggattcactggtcccagaggtcagaaaggggagccaggcagcagt
ggccagtccggccaggacgggttgccaggtttcgctgggtcgccaggtcaaccagggata
ccaggggctggcccacctggcctaccgggccatcccggggtacctggaggcctggggtgc
aatgggtcactcggtttcccgggagaccagggtgaccttgggcacagtggcccccccgga
ccccccggtccgtttgggtactccggaatgaaaggtgacatcggagactcagtgaacaat
ccggggccacctggactgcctggtcccccaggagatggaggaaaaccaggtggtgcgggt
ttgaagggtgacagaggggacccaggtttctctggcctcacagggaacagggggggccct
ggtcccaaagcatgccctggcccaccagggcctccaggaccacctggtttcccaggtctg
acaggtgcacaggggtatgccggcccagcagggccaccaggaccaagcggccctccgggg
cccccaggaaaccctggcccctcaggtgccccgggacctccaggtatcgccggtctggat
ggtctgagaggcgtgaagggagagagagggagcagaggcagtggtgagtggggccccagg
ggaccccaaggattccccggggaccagggacctacaggcagccctggacccaaaggcaca
tctctctggggtcccaaaggacagagggggcgtgaggggtcaccaggtgaaccagggctc
cctggtgatgctggtgttcctggcagagactgctatgatgtcacccatggaccaccagga
gagcctggtaatcctggtagacccgggcaaccagggccgccaggggttattgggctgccg
gggacggtgcttccatttcggggggaaatcggggatcccggtttaccaggacgcccaggt
ccgaagggggaggcgggtcccagaggactcccaggaagcccagggtttccagggcccccg
ggttccaaaggcgcaaaagggctgatgggaatgatgggtatcccagggcccgggggcatc
cccggccctgctggccccccaggatgcagaggagacaaagggatgactggagagccaggt
gccaaaggtcctcctggggatttggtgaactctgatccgttccccagacccggttcgctg
ggcccccctggtcctccggggcctcctggtttccctggcaacccgggaccaagcggagaa
gaaggtcctgcagggagaaagggtcagccagggtcacctggattaccaggtacagtcgga
accccgggaccagccggagttccgggagagcctggcattgacggagtgcgagggtttgcg
ggacctcaaggggcccctggtccgccaggtgagcagggacccccaggtacttccaggacc
tacagtcatggcttcctgttggtgatccacagccaatcagaagagattcctgtttgtcca
gtagacatggtcactatgtggaatggctacagtttactatacctggaggggcaggagaaa
gcgcacacacaggaccttggtcaggccgggtcatgtctgagggtcttcagcaccatgccg
ttctcgtattgcaacgtggcctcctgcgactacgccgggcggaacgacaagtcgtactgg
ctgtccaccacggcggcggcgcccgcggcgcccgcgtcgggcgccgagatccgccggcac
gtcagccgctgcgcggtgtgcgaggcccccgcccccgccgtggccgtgcacagccaggac
ggcgacacgcccccctgtcccccgcgctggaggagcctgtgggcggggtactccttcctc
atgcacacgggctcgggcgacgagggcggcgggcagtcgctgacctcggcgggcagctgc
ctgaaggacttccgcagccagcccttcattgagtgccagggcccgcgcggcacctgccac
tacttctccagcgcctacagcttctggctgacgcgcgtgggcgtggccgagcagtttagc
cccgcccccgccgccggcacgctgaaggaggcgtggcagcagcggcagaccaccagccgc
tgcaacgtctgcatgaaggagtga
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